C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligonucleotide/oligosaccharide-binding fold containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000224950 OBFC1-001 ENSG00000107960 9606 - 10:103882542-103918205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000224950
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000224950 8.932±0.00 4.540±0.00 4.618±0.00 4.135±2.97 1.387±0.56 5.219±4.50 1.787±0.00 3.096±0.68 7.495±6.15 7.801±0.00 4.210±2.13 5.064±3.20 4.479±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UD CIL_0006UD_0001 CGP 10:103594027-103918205
CIL_000663 CIL_000663_0001 CGP 10:103882542-104029233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IMP telomere maintenance
GO:0000784 IDA:IEA nuclear chromosome, telomeric region
GO:0003676 IEA nucleic acid binding
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0010833 IMP:IEA telomere maintenance via telomere lengthening
GO:0043047 IDA:IEA single-stranded telomeric DNA binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045740 ISS positive regulation of DNA replication
GO:0070188 IEA Stn1-Ten1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049369 Obfc1-001 protein_coding Mus_musculus 0 756
ENSMUST00000182808 Obfc1-002 protein_coding Mus_musculus 0 616
ENSMUST00000182291 Obfc1-006 protein_coding Mus_musculus 0 289
ENSMUST00000183004 Obfc1-003 retained_intron Mus_musculus 0 289
ENSMUST00000182251 Obfc1-009 processed_transcript Mus_musculus 0 289
ENSMUST00000182431 Obfc1-010 processed_transcript Mus_musculus 0 289
ENSMUST00000182873 Obfc1-005 processed_transcript Mus_musculus 0 207
ENSMUST00000182714 Obfc1-007 retained_intron Mus_musculus 9.94922e-44 182
ENSMUST00000182654 Obfc1-008 processed_transcript Mus_musculus 4e-18 97

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