C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225726 CCDC47-001 ENSG00000108588 9606 - 17:63745250-63773775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225726
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225726 18.076±0.00 22.971±0.00 17.159±8.89 11.933±7.72 12.958±7.95 5.157±3.15 16.624±8.63 10.062±5.32 13.335±6.60 7.165±0.00 21.323±9.39 23.511±6.33 25.650±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0006983 IEA ER overload response
GO:0009791 IEA post-embryonic development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding
GO:0055074 IEA calcium ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002043 Ccdc47-001 protein_coding Mus_musculus 0 2625
ENSMUST00000121523 Gm12097-001 processed_pseudogene Mus_musculus 0 1668
ENSMUST00000125383 Ccdc47-005 protein_coding Mus_musculus 0 869
ENSMUST00000106865 Ccdc47-003 protein_coding Mus_musculus 0 725
ENSMUST00000137915 Ccdc47-004 protein_coding Mus_musculus 0 466

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