C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 4 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229387 RFX4-001 ENSG00000111783 9606 + 12:106684696-106762803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyOvaryTestisENST00000229387
Transcript ID Adipose Brain Breast Kidney Ovary Testis
ENST00000229387 0.034±0.00 5.425±0.00 0.011±0.00 0.042±0.00 0.003±0.00 63.790±40.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028K CIL_00028K_0001 CGP 12:106357658-106762803
CIL_0007NZ CIL_0007NZ_0001 UCNEbase 12:106418267-106672625
CIL_0001MF CIL_0001MF_0001 CGP 12:106582907-106889316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095388 Rfx4-002 protein_coding Mus_musculus 0 3733
ENSMUST00000166696 Rfx4-006 protein_coding Mus_musculus 0 3616
ENSMUST00000060397 Rfx4-003 protein_coding Mus_musculus 0 3048
ENSMUST00000020226 Rfx4-001 processed_transcript Mus_musculus 0 1352
ENSDART00000031752 rfx4-001 protein_coding Danio_rerio 0 905

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