C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 4 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020226 Rfx4-001 ENSMUSG00000020037 10090 + 10:84838148-84872502 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverOvaryENSMUST00000020226
Transcript ID Adipose Bladder Breast Kidney Liver Ovary
ENSMUST00000020226 0.044±0.02 0.014±0.00 0.090±0.00 0.038±0.00 0.017±0.02 0.118±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028K CIL_00028K_0002 CGP 10:84622437-84906538
CIL_0007NZ CIL_0007NZ_0002 UCNEbase 10:84657795-84823112
CIL_0001MF CIL_0001MF_0002 CGP 10:84756062-85016446

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000031752 rfx4-001 protein_coding Danio_rerio 0 833
ENST00000229387 RFX4-001 protein_coding Homo_sapiens 0 1352
ENST00000357881 RFX4-003 protein_coding Homo_sapiens 0 1236
ENST00000392842 RFX4-002 protein_coding Homo_sapiens 0 1236
ENST00000536688 RFX4-006 retained_intron Homo_sapiens 0 1236
ENST00000536722 RFX4-005 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000539967 RFX4-004 protein_coding Homo_sapiens 0 586
ENST00000551640 RFX4-010 protein_coding Homo_sapiens 0 763
ENST00000552866 RFX4-011 protein_coding Homo_sapiens 0 518
ENST00000552917 RFX4-012 nonsense_mediated_decay Homo_sapiens 0 691

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