C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001MF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111783-ENSG00000111785 CGP 9606 12:106582907-106889316
GeneTranscriptPositionBiotype
ENSG00000111783 (RFX4)
regulatory factor X, 4 (influences HLA class II expression) 		ENST00000229387 (RFX4-001) 106684696-106762803 protein_coding
ENST00000357881 (RFX4-003) 106601137-106761659 protein_coding
ENST00000392842 (RFX4-002) 106582907-106762802 protein_coding
ENST00000536688 (RFX4-006) 106601172-106733506 retained_intron
ENST00000536722 (RFX4-005) 106601166-106715527 nonsense_mediated_decay
ENST00000539967 (RFX4-004) 106585727-106715544 protein_coding
ENST00000546882 (RFX4-008) 106583033-106682054 nonsense_mediated_decay
ENST00000549040 (RFX4-009) 106583645-106686932 protein_coding
ENST00000551640 (RFX4-010) 106645882-106709430 protein_coding
ENST00000552773 (RFX4-007) 106639332-106683466 retained_intron
ENST00000552866 (RFX4-011) 106684696-106693159 protein_coding
ENST00000552917 (RFX4-012) 106684808-106709389 nonsense_mediated_decay
ENSG00000111785 (RIC8B)
RIC8 guanine nucleotide exchange factor B 		ENST00000355478 (RIC8B-002) 106774671-106887284 protein_coding
ENST00000392837 (RIC8B-001) 106774595-106889316 protein_coding
ENST00000392839 (RIC8B-006) 106774640-106886786 protein_coding
ENST00000462949 (RIC8B-003) 106774714-106887290 nonsense_mediated_decay
ENST00000470628 (RIC8B-005) 106774746-106871505 retained_intron
ENST00000470960 (RIC8B-004) 106822258-106887282 nonsense_mediated_decay
ENST00000546449 (RIC8B-010) 106870823-106886360 nonsense_mediated_decay
ENST00000548914 (RIC8B-012) 106774663-106860316 protein_coding
ENST00000549643 (RIC8B-008) 106774682-106886181 protein_coding
ENST00000550215 (RIC8B-007) 106774621-106814870 nonsense_mediated_decay
ENST00000551756 (RIC8B-011) 106879728-106886250 retained_intron
ENST00000552619 (RIC8B-009) 106774682-106814966 protein_coding
ENSG00000257711 (RP11-482D24.2)
 ENST00000547531 (RP11-482D24.2-001) 106680758-106684700 antisense
ENSG00000257918 (RP11-482D24.3)
 ENST00000552415 (RP11-482D24.3-001) 106714924-106733066 antisense
CIL_0001MF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020037-ENSMUSG00000035620 CGP 10090 10:84756062-85016446
GeneTranscriptPositionBiotype
ENSMUSG00000020037 (Rfx4)
regulatory factor X, 4 (influences HLA class II expression) 		ENSMUST00000020226 (Rfx4-001) 84838148-84872502 processed_transcript
ENSMUST00000060397 (Rfx4-003) 84756062-84906144 protein_coding
ENSMUST00000095388 (Rfx4-002) 84838148-84906538 protein_coding
ENSMUST00000165868 (Rfx4-005) 84762238-84814670 processed_transcript
ENSMUST00000166696 (Rfx4-006) 84834746-84906534 protein_coding
ENSMUST00000173479 (Rfx4-004) 84762238-84814670 processed_transcript
ENSMUSG00000035620 (Ric8b)
resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 		ENSMUST00000038523 (Ric8b-201) 84917616-85016446 protein_coding
ENSMUST00000095385 (Ric8b-202) 84917656-85016446 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MF_0001ENSG00000111783ENST00000229387ENST00000357881ENST00000392842ENST00000536688ENST00000536722ENST00000539967ENST00000546882ENST00000549040ENST00000551640ENST00000552773ENST00000552866ENST00000552917ENSG00000111785ENST00000355478ENST00000392837ENST00000392839ENST00000462949ENST00000470628ENST00000470960ENST00000546449ENST00000548914ENST00000549643ENST00000550215ENST00000551756ENST00000552619ENSG00000257711ENST00000547531ENSG00000257918ENST00000552415CIL_0001MF_0002ENSMUSG00000020037ENSMUST00000020226ENSMUST00000060397ENSMUST00000095388ENSMUST00000165868ENSMUST00000166696ENSMUST00000173479ENSMUSG00000035620ENSMUST00000038523ENSMUST00000095385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MF_0001ENSG00000111783ENST00000229387ENST00000357881ENST00000392842ENST00000536688ENST00000551640ENSG00000111785ENST00000355478ENST00000392837ENST00000392839ENST00000462949ENST00000470628ENST00000470960ENSG00000257711ENST00000547531ENSG00000257918ENST00000552415CIL_0001MF_0002ENSMUSG00000020037ENSMUST00000020226ENSMUST00000060397ENSMUST00000095388ENSMUST00000166696ENSMUSG00000035620ENSMUST00000038523ENSMUST00000095385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111783 ENST00000229387 0.034±0.00 N/A N/A 5.425±0.00 0.011±0.00 N/A N/A 0.042±0.00 N/A N/A N/A 0.003±0.00 N/A 63.790±40.32
ENST00000357881 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000392842 N/A N/A N/A 4.694±3.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536688 N/A 0.128±0.00 N/A N/A 0.015±0.00 N/A 0.013±0.00 0.037±0.00 0.039±0.00 N/A N/A 0.015±0.00 N/A N/A
ENST00000536722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551640 N/A N/A N/A 1.602±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111785 ENST00000355478 N/A N/A N/A N/A N/A N/A N/A 2.055±0.00 N/A 0.703±0.00 N/A N/A N/A N/A
ENST00000392837 0.561±0.00 0.820±0.00 N/A 2.647±0.00 1.192±0.00 0.749±0.34 3.048±0.00 0.398±0.00 1.145±0.65 0.321±0.00 N/A 1.114±0.46 0.957±0.23 2.175±0.40
ENST00000392839 N/A N/A N/A N/A 2.072±0.00 1.560±0.40 3.985±0.00 2.817±0.00 N/A N/A 1.373±0.03 1.097±0.30 1.347±0.00 N/A
ENST00000462949 0.711±0.00 N/A N/A N/A N/A 1.659±0.00 N/A N/A N/A N/A 0.880±0.00 1.169±0.00 0.854±0.13 1.197±0.00
ENST00000470628 N/A N/A N/A 2.856±0.00 1.712±0.00 0.990±0.00 1.556±0.00 N/A N/A 1.858±0.00 N/A 2.054±0.00 N/A N/A
ENST00000470960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.00
ENST00000546449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257711 ENST00000547531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A
ENSG00000257918 ENST00000552415 0.055±0.00 N/A N/A N/A 0.545±0.00 N/A N/A 0.131±0.00 N/A N/A N/A 0.044±0.00 0.094±0.00 89.232±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020037 ENSMUST00000020226 0.044±0.02 N/A 0.014±0.00 N/A 0.090±0.00 N/A N/A 0.038±0.00 0.017±0.02 N/A N/A 0.118±0.08 N/A N/A
ENSMUST00000060397 N/A N/A N/A 5.677±3.42 N/A N/A N/A 0.058±0.02 N/A N/A 0.001±0.00 N/A N/A 3.339±0.00
ENSMUST00000095388 0.011±0.00 0.041±0.02 0.007±0.00 2.044±0.76 0.048±0.02 0.021±0.00 0.016±0.01 0.163±0.09 2.161±1.67 0.061±0.03 0.006±0.00 0.057±0.03 0.014±0.00 19.339±7.85
ENSMUST00000165868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166696 N/A 0.003±0.00 N/A 0.717±0.00 N/A N/A N/A 0.090±0.08 N/A N/A N/A N/A N/A 4.751±0.00
ENSMUST00000173479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035620 ENSMUST00000038523 4.354±1.80 9.175±0.92 2.756±0.02 5.165±0.73 4.435±2.59 5.651±0.97 4.145±0.62 3.576±1.62 1.874±0.83 4.397±1.04 5.452±0.49 7.701±2.68 1.115±0.24 0.723±0.48
ENSMUST00000095385 4.603±1.68 1.013±0.00 6.765±0.60 12.072±3.82 7.466±4.08 2.537±0.00 6.476±1.22 3.118±0.62 1.898±1.01 3.724±1.41 4.694±0.74 4.639±1.77 3.597±0.72 0.813±0.41

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