C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231137 PCDHB7-001 ENSG00000113212 9606 + 5:141172619-141176383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLungMusclePlacentaENST00000231137
Transcript ID Adipose Adrenal Breast Lung Muscle Placenta
ENST00000231137 2.641±0.00 1.590±0.00 0.788±0.00 1.211±0.53 0.208±0.00 0.620±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0007 CGP 5:141150022-141176383
CIL_00062S CIL_00062S_0008 CGP 5:141172619-141180529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 1746
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 933
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 887
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 774

Loading