C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056712 Pcdhb4-201 ENSMUSG00000045689 10090 + 18:37307455-37311173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056712 0.840±0.18 0.625±0.15 0.257±0.00 0.901±0.45 0.777±0.61 0.231±0.04 0.267±0.04 0.269±0.05 0.028±0.01 1.169±0.37 0.084±0.03 1.118±0.53 0.024±0.02 0.272±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000L CGP 18:37300799-37311173
CIL_00062S CIL_00062S_000N CGP 18:37307455-37323913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 1090
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 955
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1746
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 1037
ENST00000231137 PCDHB7-001 protein_coding Homo_sapiens 0 933
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 1051
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 918
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 881
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 905
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 845
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 894
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1020
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1053
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 979
ENST00000618012 PCDHGB9P-001 unprocessed_pseudogene Homo_sapiens 0.000000000002 79
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 952
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 905
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 1037
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 1020
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 839
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 2e-27 126
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 787
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 894
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 881
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 905

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