C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: natural killer cell triggering receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000232978 NKTR-001 ENSG00000114857 9606 + 3:42600614-42648741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000232978
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000232978 8.624±0.00 2.113±0.00 3.704±0.86 3.979±0.00 3.640±0.72 2.260±0.72 2.424±0.17 3.228±0.92 5.113±0.00 1.043±0.00 7.881±2.04 2.564±1.17 10.912±6.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000480 CIL_000480_0001 CGP 3:42489299-42601080
CIL_00047Z CIL_00047Z_0001 CGP 3:42547969-42601080
CIL_000488 CIL_000488_0001 CGP 3:42581840-42648741
CIL_000487 CIL_000487_0001 CGP 3:42600614-42665854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000413 IEA protein peptidyl-prolyl isomerization
GO:0003755 IEA peptidyl-prolyl cis-trans isomerase activity
GO:0006457 IEA protein folding
GO:0016018 TAS cyclosporin A binding
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035112 Nktr-001 protein_coding Mus_musculus 0 2765
ENSMUST00000182225 Nktr-006 protein_coding Mus_musculus 0 1696
ENSMUST00000182179 Nktr-003 nonsense_mediated_decay Mus_musculus 0 1005
ENSMUST00000182086 Nktr-012 retained_intron Mus_musculus 0 483
ENSMUST00000182904 Nktr-005 retained_intron Mus_musculus 0 479
ENSMUST00000183070 Nktr-002 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000182337 Nktr-007 protein_coding Mus_musculus 0 455
ENSMUST00000182763 Nktr-009 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000182311 Nktr-010 protein_coding Mus_musculus 0 285
ENSMUST00000183311 Nktr-004 retained_intron Mus_musculus 0 220
ENSMUST00000182395 Nktr-011 retained_intron Mus_musculus 6e-38 165

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