C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233190 NDUFS1-001 ENSG00000023228 9606 - 2:206114817-206159603 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000233190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000233190 3.859±0.00 4.701±0.00 4.454±0.00 8.072±1.40 3.724±1.59 4.804±0.20 14.133±6.61 5.933±1.52 5.573±0.89 2.525±0.00 6.367±2.01 4.204±0.59 2.702±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039O CIL_00039O_0001 CGP 2:205993721-206159603
CIL_0001R4 CIL_0001R4_0001 CGP 2:206114817-206162928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005743 TAS mitochondrial inner membrane
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0005758 IDA mitochondrial intermembrane space
GO:0006120 NAS mitochondrial electron transport, NADH to ubiquinone
GO:0008137 IEA:NAS NADH dehydrogenase (ubiquinone) activity
GO:0008637 IDA apoptotic mitochondrial changes
GO:0009055 IEA:NAS electron carrier activity
GO:0016020 IEA membrane
GO:0016491 IEA oxidoreductase activity
GO:0016651 IEA oxidoreductase activity, acting on NAD(P)H
GO:0022904 TAS respiratory electron transport chain
GO:0042773 IEA ATP synthesis coupled electron transport
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045333 IMP cellular respiration
GO:0046034 IMP ATP metabolic process
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051537 IEA 2 iron, 2 sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:0051881 IMP regulation of mitochondrial membrane potential
GO:0055114 IEA oxidation-reduction process
GO:0072593 IMP reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027111 Ndufs1-001 protein_coding Mus_musculus 0 2985
ENSMUST00000168099 Ndufs1-006 protein_coding Mus_musculus 0 2920
ENSMUST00000185827 Ndufs1-005 retained_intron Mus_musculus 0 1568
ENSMUST00000140612 Ndufs1-002 retained_intron Mus_musculus 0 1399
ENSMUST00000185847 Ndufs1-011 protein_coding Mus_musculus 0 580
ENSMUST00000185732 Ndufs1-010 protein_coding Mus_musculus 0 457
ENSMUST00000187835 Ndufs1-013 retained_intron Mus_musculus 0 390
ENSMUST00000188370 Ndufs1-007 protein_coding Mus_musculus 0 355
ENSMUST00000040484 Gcsh-001 protein_coding Mus_musculus 0 342
ENSMUST00000185412 Ndufs1-008 protein_coding Mus_musculus 0 320
ENSMUST00000118891 Gm15047-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000187756 Ndufs1-012 nonsense_mediated_decay Mus_musculus 0 219
ENSMUST00000186569 Ndufs1-004 retained_intron Mus_musculus 5.60519e-45 189
ENSMUST00000190095 Ndufs1-003 retained_intron Mus_musculus 7e-29 135
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000000005 77
ENSMUST00000029674 Efna4-001 protein_coding Mus_musculus 0.000001 62
ENSMUST00000121101 Rspry1-002 protein_coding Mus_musculus 0.0008 53

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