C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine cleavage system protein H (aminomethyl carrier)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040484 Gcsh-001 ENSMUSG00000034424 10090 - 8:116981810-116993537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040484 36.868±14.11 46.032±11.15 25.865±1.52 18.294±3.96 26.835±5.47 16.252±1.65 16.024±4.20 66.249±3.01 51.331±12.28 8.850±0.87 18.538±3.86 39.481±6.63 40.980±33.75 5.017±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z7 CIL_0001Z7_0002 CGP 8:116969599-116993537
CIL_00043F CIL_00043F_0002 CGP 8:116981810-117082449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004047 IEA aminomethyltransferase activity
GO:0005739 IDA mitochondrion
GO:0005960 IEA glycine cleavage complex
GO:0019899 IEA enzyme binding
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233190 NDUFS1-001 protein_coding Homo_sapiens 0 342
ENST00000315467 GCSH-001 protein_coding Homo_sapiens 0 505
ENST00000414815 RP11-561N12.1-001 processed_pseudogene Homo_sapiens 0 418
ENST00000431120 GCSHP3-001 processed_pseudogene Homo_sapiens 0 340
ENST00000443090 GCSHP5-001 processed_pseudogene Homo_sapiens 0 496
ENST00000445989 RP11-279E1.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000509113 CTD-2533K21.1-001 processed_pseudogene Homo_sapiens 1e-39 165
ENST00000515639 AC005740.3-001 processed_pseudogene Homo_sapiens 0 473
ENST00000561801 GCSH-005 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000564386 GCSH-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000564477 GCSH-003 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000566566 GCSH-004 protein_coding Homo_sapiens 0 385

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