C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233573 ITGA4-006 ENSG00000115232 9606 + 2:181457428-181509805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLiverLungOvaryENST00000233573
Transcript ID Bladder Heart Kidney Liver Lung Ovary
ENST00000233573 0.324±0.00 0.540±0.00 0.724±0.00 2.131±0.00 6.093±0.00 1.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BZ CIL_0004BZ_0002 CGP 2:180967248-181536187
CIL_00080Y CIL_00080Y_0001 VISTA 2:181386314-181987082
CIL_0004C0 CIL_0004C0_0002 CGP 2:181457202-181680665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 IEA integrin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099972 Itga4-001 protein_coding Mus_musculus 0 2001
ENSMUST00000135919 Itga4-004 processed_transcript Mus_musculus 0 1712
ENSMUST00000126312 Itga4-005 processed_transcript Mus_musculus 0 1306

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