C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ventral anterior homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172821 Vax1-001 ENSMUSG00000006270 10090 - 19:59166187-59170056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172821
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172821 0.028±0.00 0.073±0.02 0.012±0.00 3.772±2.46 0.038±0.00 0.014±0.00 0.029±0.00 0.122±0.00 0.063±0.01 0.070±0.05 0.236±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0002 VISTA 19:58832961-59434097
CIL_0007ZF CIL_0007ZF_0002 VISTA 19:58834549-59435577
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0002OL CIL_0002OL_0002 CGP 19:58973358-59170056
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0008MK CIL_0008MK_0002 VISTA 19:59123214-59725570
CIL_0008G5 CIL_0008G5_0002 VISTA 19:59165505-59766798
CIL_00019Z CIL_00019Z_0002 CGP 19:59166187-59237370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IMP neuron migration
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007406 IMP negative regulation of neuroblast proliferation
GO:0007411 IMP axon guidance
GO:0007417 IMP central nervous system development
GO:0007420 IMP brain development
GO:0030154 IMP cell differentiation
GO:0031490 IDA chromatin DNA binding
GO:0035914 IMP skeletal muscle cell differentiation
GO:0043010 IGI camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234392 VAX2-001 protein_coding Homo_sapiens 0 250
ENST00000277905 VAX1-002 protein_coding Homo_sapiens 0 579
ENST00000369206 VAX1-001 protein_coding Homo_sapiens 0 1236

Loading