C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234420 MSH6-001 ENSG00000116062 9606 + 2:47783082-47810101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000234420
Transcript ID Bladder
ENST00000234420 0.873±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066I CIL_00066I_0001 CGP 2:47695530-47905793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IBA nuclear chromosome
GO:0000287 IDA magnesium ion binding
GO:0000400 IDA four-way junction DNA binding
GO:0000710 ISS meiotic mismatch repair
GO:0000790 IEA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003684 IEA damaged DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006200 IBA ATP catabolic process
GO:0006281 IDA DNA repair
GO:0006298 IDA:IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0008340 ISS determination of adult lifespan
GO:0008630 ISS intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 ISS response to UV
GO:0016446 ISS somatic hypermutation of immunoglobulin genes
GO:0016447 ISS somatic recombination of immunoglobulin gene segments
GO:0016887 IDA ATPase activity
GO:0030983 IDA:IEA mismatched DNA binding
GO:0032137 IDA guanine/thymine mispair binding
GO:0032142 IDA single guanine insertion binding
GO:0032143 IDA single thymine insertion binding
GO:0032301 IDA MutSalpha complex
GO:0032357 IDA oxidized purine DNA binding
GO:0032405 IDA MutLalpha complex binding
GO:0035064 IDA methylated histone binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043531 IDA ADP binding
GO:0045190 ISS isotype switching
GO:0045910 IDA negative regulation of DNA recombination
GO:0051096 IDA positive regulation of helicase activity
GO:0097193 ISS intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005503 Msh6-201 protein_coding Mus_musculus 0 4169
ENSMUST00000005504 Fbxo11-001 protein_coding Mus_musculus 0 1988
ENSMUST00000130379 Fbxo11-004 protein_coding Mus_musculus 0 1988
ENSMUST00000121562 Gm11855-001 processed_pseudogene Mus_musculus 0 1515
ENSMUST00000135639 Fbxo11-002 nonsense_mediated_decay Mus_musculus 0 1085
ENSDART00000153436 fbxo11a-001 protein_coding Danio_rerio 0 193

Loading