C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00066I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116062-ENSG00000138081 CGP 9606 2:47695530-47905793
GeneTranscriptPositionBiotype
ENSG00000116062 (MSH6)
mutS homolog 6 		ENST00000234420 (MSH6-001) 47783082-47810101 protein_coding
ENST00000411819 (MSH6-006) 47784181-47798733 protein_coding
ENST00000420813 (MSH6-005) 47783955-47796036 protein_coding
ENST00000445503 (MSH6-002) 47783082-47806953 nonsense_mediated_decay
ENST00000454137 (MSH6-010) 47695816-47757793 processed_transcript
ENST00000455383 (MSH6-004) 47783585-47798627 protein_coding
ENST00000456246 (MSH6-003) 47783128-47798920 nonsense_mediated_decay
ENST00000493177 (MSH6-007) 47783170-47784976 processed_transcript
ENST00000538136 (MSH6-201) 47783955-47806945 protein_coding
ENST00000540021 (MSH6-202) 47783082-47806945 protein_coding
ENST00000606499 (MSH6-008) 47695819-47791116 protein_coding
ENST00000607272 (MSH6-009) 47695530-47709833 processed_transcript
ENST00000614496 (MSH6-203) 47783082-47806945 protein_coding
ENST00000616033 (MSH6-204) 47783151-47801332 protein_coding
ENST00000622629 (MSH6-205) 47783082-47806952 protein_coding
ENSG00000224058 (AC006509.7)
 ENST00000420788 (AC006509.7-001) 47731402-47732035 processed_pseudogene
ENSG00000235369 (RPL36AP15)
ribosomal protein L36a pseudogene 15 		ENST00000444514 (RPL36AP15-001) 47797826-47798091 processed_pseudogene
ENSG00000236549 (AC079807.3)
 ENST00000422792 (AC079807.3-001) 47883455-47883909 processed_pseudogene
CIL_00066I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005370-ENSMUSG00000005371 CGP 10090 17:87975050-88065291
GeneTranscriptPositionBiotype
ENSMUSG00000005370 (Msh6)
mutS homolog 6 (E. coli) 		ENSMUST00000005503 (Msh6-201) 87975050-87990883 protein_coding
ENSMUSG00000005371 (Fbxo11)
F-box protein 11 		ENSMUST00000005504 (Fbxo11-001) 87990859-88065291 protein_coding
ENSMUST00000127334 (Fbxo11-003) 87993213-88000982 retained_intron
ENSMUST00000130379 (Fbxo11-004) 87990859-88065028 protein_coding
ENSMUST00000135639 (Fbxo11-002) 87991418-88008696 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066I_0001ENSG00000116062ENST00000234420ENST00000411819ENST00000420813ENST00000445503ENST00000454137ENST00000455383ENST00000456246ENST00000493177ENST00000538136ENST00000540021ENST00000606499ENST00000607272ENST00000614496ENST00000616033ENST00000622629ENSG00000224058ENST00000420788ENSG00000235369ENST00000444514ENSG00000236549ENST00000422792CIL_00066I_0002ENSMUSG00000005370ENSMUST00000005503ENSMUSG00000005371ENSMUST00000005504ENSMUST00000127334ENSMUST00000130379ENSMUST00000135639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066I_0001ENSG00000116062ENST00000234420ENST00000538136ENST00000540021ENST00000622629ENSG00000224058ENST00000420788ENSG00000235369ENST00000444514ENSG00000236549ENST00000422792CIL_00066I_0002ENSMUSG00000005370ENSMUST00000005503ENSMUSG00000005371ENSMUST00000005504ENSMUST00000127334ENSMUST00000130379ENSMUST00000135639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116062 ENST00000234420 N/A N/A 0.873±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.675±0.00 N/A N/A N/A
ENST00000540021 N/A 8.153±0.00 N/A 9.611±0.00 7.195±0.00 N/A 1.095±0.00 6.729±0.00 4.039±1.20 4.488±0.00 N/A 18.854±3.86 8.087±6.11 26.414±5.24
ENST00000606499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622629 N/A N/A 1.687±0.00 N/A N/A N/A 2.308±1.34 N/A N/A 3.944±0.17 N/A 12.672±0.00 7.207±4.84 22.320±0.00
ENSG00000224058 ENST00000420788 0.100±0.00 0.715±0.00 N/A 0.308±0.00 0.129±0.00 0.102±0.00 0.294±0.00 0.321±0.00 0.066±0.00 0.222±0.00 0.120±0.00 0.131±0.01 0.065±0.00 0.139±0.08
ENSG00000235369 ENST00000444514 0.051±0.00 0.526±0.00 4.145±0.00 0.827±0.00 0.437±0.18 5.372±0.00 0.404±0.25 N/A 1.400±1.35 1.667±0.71 N/A 1.654±2.20 N/A 0.090±0.00
ENSG00000236549 ENST00000422792 N/A 0.159±0.00 0.240±0.00 0.156±0.00 0.492±0.00 0.787±0.00 0.073±0.02 0.489±0.15 0.046±0.00 0.516±0.00 N/A 0.150±0.10 N/A 0.175±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005370 ENSMUST00000005503 3.515±1.56 3.208±0.00 4.504±0.32 7.893±0.98 3.647±1.15 3.155±0.39 1.268±0.23 2.438±0.25 5.786±5.53 3.029±0.43 1.308±0.20 9.224±7.12 12.579±9.23 6.346±6.00
ENSMUSG00000005371 ENSMUST00000005504 1.581±0.00 N/A 5.264±0.00 10.003±0.90 4.009±0.00 N/A N/A N/A 2.320±0.24 N/A 3.970±0.90 5.350±0.27 4.456±1.55 N/A
ENSMUST00000127334 N/A N/A N/A 66.043±0.00 N/A N/A N/A N/A N/A N/A N/A 61.850±0.00 39.506±10.04 38.038±0.00
ENSMUST00000130379 10.777±2.97 11.788±2.06 11.586±0.12 20.013±4.17 10.305±1.67 7.362±1.21 5.619±0.56 8.116±1.37 4.918±1.09 16.136±1.41 2.781±0.99 11.748±3.38 7.823±1.86 3.984±0.59
ENSMUST00000135639 6.139±2.08 N/A N/A 14.845±4.79 7.474±2.02 N/A 3.778±1.16 4.230±0.23 N/A 15.778±0.00 N/A 20.099±4.94 15.380±0.00 N/A

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