C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000242067 BBS9-004 ENSG00000122507 9606 + 7:33129532-33606068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverOvaryTestisENST00000242067
Transcript ID Brain Breast Colon Liver Ovary Testis
ENST00000242067 0.813±0.26 0.859±0.00 1.191±0.00 1.175±0.00 2.123±0.00 1.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FH CIL_0003FH_0001 CGP 7:33129244-34155872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000242 IDA pericentriolar material
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005929 IDA cilium
GO:0007601 IEA visual perception
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0034464 IDA BBSome
GO:0042384 IEA cilium assembly
GO:0045444 ISS fat cell differentiation
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147405 Bbs9-004 protein_coding Mus_musculus 0 2603
ENSMUST00000147712 Bbs9-002 protein_coding Mus_musculus 0 2547
ENSMUST00000150395 Bbs9-003 protein_coding Mus_musculus 0 2521
ENSMUST00000039798 Bbs9-001 protein_coding Mus_musculus 0 2521
ENSMUST00000127296 Bbs9-005 nonsense_mediated_decay Mus_musculus 0 1170
ENSMUST00000130479 Bbs9-006 retained_intron Mus_musculus 0 431
ENSMUST00000136084 Bbs9-011 protein_coding Mus_musculus 0 283
ENSMUST00000152719 Bbs9-009 processed_transcript Mus_musculus 0 691
ENSMUST00000137547 Bbs9-010 processed_transcript Mus_musculus 0 501

Loading