C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171999 Gcat-203 ENSMUSG00000006378 10090 + 15:79030874-79042531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171999
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171999 8.860±1.95 21.337±4.56 2.849±1.32 2.055±1.25 9.594±4.45 11.029±1.72 3.830±0.22 42.708±7.88 54.477±31.09 6.989±0.49 1.072±0.36 7.234±1.77 24.754±23.28 1.401±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_000409 CIL_000409_0002 CGP 15:79028212-79043558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008890 IEA glycine C-acetyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007398 gcat-001 protein_coding Danio_rerio 1e-38 165
ENST00000248924 GCAT-001 protein_coding Homo_sapiens 0 1240
ENST00000249041 GALR3-001 protein_coding Homo_sapiens 0 435
ENST00000323205 GCAT-002 protein_coding Homo_sapiens 0 1086
ENST00000329003 GALR2-001 protein_coding Homo_sapiens 5e-37 159
ENST00000445195 GCAT-004 protein_coding Homo_sapiens 0 307
ENST00000451984 GCAT-003 protein_coding Homo_sapiens 0 460
ENST00000478203 GCAT-007 retained_intron Homo_sapiens 0 462
ENST00000603606 CTD-2302E22.5-001 processed_pseudogene Homo_sapiens 0 970

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