C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047373 Sox15-001 ENSMUSG00000041287 10090 + 11:69655314-69656727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderPlacentaENSMUST00000047373
Transcript ID Bladder Placenta
ENSMUST00000047373 26.245±5.92 32.059±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0014718 IMP positive regulation of satellite cell activation involved in skeletal muscle regeneration
GO:0030154 IGI cell differentiation
GO:0043403 IMP skeletal muscle tissue regeneration
GO:0044798 IDA nuclear transcription factor complex
GO:0045843 IDA negative regulation of striated muscle tissue development
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0048627 IMP myoblast development
GO:0070318 IMP positive regulation of G0 to G1 transition
GO:2000288 IMP positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245479 SOX9-001 protein_coding Homo_sapiens 0.00000000002 77
ENST00000250055 SOX15-001 protein_coding Homo_sapiens 0 582
ENST00000340356 SOX18-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000360880 SOX10-001 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000376945 SOX21-001 protein_coding Homo_sapiens 1e-35 156
ENST00000396884 SOX10-002 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000427770 SOX10-003 protein_coding Homo_sapiens 4e-16 90
ENST00000538513 SOX15-002 protein_coding Homo_sapiens 0 582
ENST00000570788 SOX15-003 protein_coding Homo_sapiens 0 468

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