C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001384 Cnn1-201 ENSMUSG00000001349 10090 + 9:22099281-22109630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001384 75.314±68.49 0.857±0.38 626.013±31.30 0.127±0.06 21.817±9.18 571.901±95.76 5.585±2.83 2.211±1.67 0.167±0.13 40.523±7.07 0.449±0.15 138.836±63.28 5.415±10.20 5.125±4.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000767 CIL_000767_0002 CGP 9:22072246-22109630
CIL_00076D CIL_00076D_0002 CGP 9:22099281-22117148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005856 ISO cytoskeleton
GO:0005925 IEA focal adhesion
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252456 CNN1-001 protein_coding Homo_sapiens 0 1356
ENST00000535659 CNN1-003 protein_coding Homo_sapiens 0 1064
ENST00000585869 CNN1-005 protein_coding Homo_sapiens 2e-33 147
ENST00000586059 CNN1-004 protein_coding Homo_sapiens 0 551
ENST00000586577 CNN1-008 protein_coding Homo_sapiens 0 547
ENST00000588468 CNN1-006 processed_transcript Homo_sapiens 0 257
ENST00000588935 CNN1-007 protein_coding Homo_sapiens 0 520
ENST00000592923 CNN1-002 protein_coding Homo_sapiens 0 1279

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