C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jagged 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254958 JAG1-002 ENSG00000101384 9606 - 20:10637684-10674107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254958
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254958 19.326±0.00 12.340±0.00 1.900±0.00 2.442±1.08 8.440±1.72 10.427±4.41 3.533±1.17 4.611±4.23 4.842±4.35 13.379±7.32 4.119±0.00 6.632±1.42 21.621±13.40 5.228±3.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043P CIL_00043P_0001 CGP 20:10435303-10674107
CIL_0009DB CIL_0009DB_0001 VISTA 20:10512535-11113791
CIL_000362 CIL_000362_0001 CGP 20:10637684-11926609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0001709 NAS cell fate determination
GO:0001974 IEA blood vessel remodeling
GO:0002011 IEA morphogenesis of an epithelial sheet
GO:0002456 IMP T cell mediated immunity
GO:0003184 IMP pulmonary valve morphogenesis
GO:0003215 ISS cardiac right ventricle morphogenesis
GO:0005112 NAS Notch binding
GO:0005198 NAS structural molecule activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 NAS extracellular region
GO:0005886 IDA plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0007154 IEA cell communication
GO:0007219 IMP:IEA Notch signaling pathway
GO:0007220 TAS Notch receptor processing
GO:0007275 IEA multicellular organismal development
GO:0007399 NAS nervous system development
GO:0008083 NAS growth factor activity
GO:0009887 IEA organ morphogenesis
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030097 NAS hemopoiesis
GO:0030216 NAS keratinocyte differentiation
GO:0030334 NAS regulation of cell migration
GO:0032495 IEA response to muramyl dipeptide
GO:0035909 ISS aorta morphogenesis
GO:0042127 NAS regulation of cell proliferation
GO:0042491 IEA auditory receptor cell differentiation
GO:0043010 IEA camera-type eye development
GO:0045177 IEA apical part of cell
GO:0045445 NAS myoblast differentiation
GO:0045446 NAS endothelial cell differentiation
GO:0045596 IEA negative regulation of cell differentiation
GO:0045599 IEA negative regulation of fat cell differentiation
GO:0045639 IEA positive regulation of myeloid cell differentiation
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048839 IEA inner ear development
GO:0060411 ISS cardiac septum morphogenesis
GO:0061073 IEA ciliary body morphogenesis
GO:0061156 IMP pulmonary artery morphogenesis
GO:0061309 ISS cardiac neural crest cell development involved in outflow tract morphogenesis
GO:0061314 IMP Notch signaling involved in heart development
GO:0061444 ISS endocardial cushion cell development
GO:0072017 IEA distal tubule development
GO:0072070 IEA loop of Henle development
GO:0097150 IEP neuronal stem cell maintenance
GO:2000737 IMP negative regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028735 Jag1-001 protein_coding Mus_musculus 0 6926
ENSMUST00000133640 Jag1-002 retained_intron Mus_musculus 0 1013
ENSDART00000019323 jag1b-001 protein_coding Danio_rerio 0 259

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