C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000362_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101384-ENSG00000132640 CGP 9606 20:10637684-11926609
GeneTranscriptPositionBiotype
ENSG00000101384 (JAG1)
jagged 1 		ENST00000254958 (JAG1-002) 10637684-10674107 protein_coding
ENST00000423891 (JAG1-004) 10637759-10662506 processed_transcript
ENST00000488480 (JAG1-011) 10644443-10646366 retained_intron
ENST00000612857 (JAG1-010) 10645372-10647312 retained_intron
ENST00000613518 (JAG1-003) 10645722-10648028 protein_coding
ENST00000617357 (JAG1-013) 10639870-10641276 retained_intron
ENST00000617965 (JAG1-007) 10651233-10652722 retained_intron
ENST00000620743 (JAG1-009) 10647981-10649588 retained_intron
ENST00000622545 (JAG1-008) 10647048-10650257 nonsense_mediated_decay
ENSG00000125899 (C20orf187)
chromosome 20 open reading frame 187 		ENST00000378252 (C20orf187-001) 11027760-11029366 lincRNA
ENSG00000132640 (BTBD3)
BTB (POZ) domain containing 3 		ENST00000254977 (BTBD3-002) 11890723-11926609 protein_coding
ENST00000378226 (BTBD3-201) 11917865-11926590 protein_coding
ENST00000399006 (BTBD3-003) 11890817-11926609 protein_coding
ENST00000405977 (BTBD3-001) 11890828-11926609 protein_coding
ENST00000422390 (BTBD3-005) 11892493-11922687 protein_coding
ENST00000430557 (BTBD3-008) 11918851-11922729 protein_coding
ENST00000449299 (BTBD3-006) 11890870-11923010 nonsense_mediated_decay
ENST00000450368 (BTBD3-004) 11891327-11918463 protein_coding
ENST00000455911 (BTBD3-007) 11918810-11922849 protein_coding
ENST00000471120 (BTBD3-009) 11919277-11923035 processed_transcript
ENST00000473180 (BTBD3-012) 11921566-11923130 processed_transcript
ENST00000473416 (BTBD3-011) 11919541-11922889 processed_transcript
ENST00000488503 (BTBD3-010) 11919277-11922985 processed_transcript
ENST00000618296 (BTBD3-202) 11917865-11926590 protein_coding
ENST00000618918 (BTBD3-203) 11892493-11926590 protein_coding
ENSG00000222281 (RN7SKP111)
RNA, 7SK small nuclear pseudogene 111 		ENST00000410349 (RN7SKP111-201) 11818821-11819091 misc_RNA
ENSG00000224961 (RP1-278O22.1)
 ENST00000417299 (RP1-278O22.1-001) 10753090-10753966 lincRNA
ENSG00000228422 (LINC00687)
long intergenic non-protein coding RNA 687 		ENST00000427835 (LINC00687-001) 11809987-11849611 lincRNA
ENST00000557899 (LINC00687-002) 11810021-11870715 lincRNA
ENST00000558175 (LINC00687-003) 11800463-11810426 lincRNA
ENSG00000230990 (RP4-734C18.1)
 ENST00000412405 (RP4-734C18.1-001) 11266116-11268835 lincRNA
ENST00000444792 (RP4-734C18.1-002) 11234170-11301525 lincRNA
ENSG00000234900 (RP1-278O22.2)
 ENST00000418690 (RP1-278O22.2-001) 10753278-10765286 lincRNA
ENSG00000235544 (RPS11P1)
ribosomal protein S11 pseudogene 1 		ENST00000451072 (RPS11P1-001) 11345383-11345855 processed_pseudogene
ENSG00000236526 (RP4-742J24.2)
 ENST00000439529 (RP4-742J24.2-001) 11909404-11918677 antisense
ENSG00000261411 (RP11-268G13.1)
 ENST00000569833 (RP11-268G13.1-001) 11685144-11687323 lincRNA
ENSG00000270777 (RP11-103J8.2)
 ENST00000605338 (RP11-103J8.2-001) 11001304-11001763 lincRNA
ENSG00000271397 (RP5-1128N12.2)
 ENST00000603272 (RP5-1128N12.2-001) 11608436-11609048 processed_pseudogene
CIL_000362_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027276-ENSMUSG00000062098 CGP 10090 2:137081456-138589292
GeneTranscriptPositionBiotype
ENSMUSG00000027276 (Jag1)
jagged 1 		ENSMUST00000028735 (Jag1-001) 137081456-137116644 protein_coding
ENSMUST00000133640 (Jag1-002) 137082893-137085949 retained_intron
ENSMUSG00000062098 (Btbd3)
BTB (POZ) domain containing 3 		ENSMUST00000075410 (Btbd3-001) 138278493-138287422 protein_coding
ENSMUST00000091556 (Btbd3-002) 138256565-138287422 protein_coding
ENSMUST00000128656 (Btbd3-003) 138256670-138589292 processed_transcript
ENSMUST00000155646 (Btbd3-004) 138256662-138539208 processed_transcript
ENSMUSG00000082466 (Gm14060)
predicted gene 14060 		ENSMUST00000117747 (Gm14060-001) 138453878-138454324 processed_pseudogene
ENSMUSG00000085504 (Gm14055)
predicted gene 14055 		ENSMUST00000130262 (Gm14055-001) 137288503-137329126 lincRNA
ENSMUSG00000085640 (Gm14064)
predicted gene 14064 		ENSMUST00000134833 (Gm14064-001) 137663435-137829244 lincRNA
ENSMUSG00000086214 (Gm14062)
predicted gene 14062 		ENSMUST00000134795 (Gm14062-001) 137870046-137876831 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101384 ENST00000254958 19.326±0.00 12.340±0.00 1.900±0.00 2.442±1.08 8.440±1.72 10.427±4.41 3.533±1.17 4.611±4.23 4.842±4.35 13.379±7.32 4.119±0.00 6.632±1.42 21.621±13.40 5.228±3.86
ENST00000423891 N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 1.445±0.00 1.060±0.00 N/A N/A N/A
ENST00000488480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125899 ENST00000378252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.742±0.66
ENSG00000132640 ENST00000254977 1.700±0.00 N/A N/A 3.726±0.00 N/A 1.577±0.00 0.644±0.34 1.884±0.00 N/A 1.450±0.88 0.867±0.00 0.953±0.27 2.364±0.53 1.604±0.00
ENST00000378226 N/A N/A 1.325±0.00 13.145±2.73 N/A N/A 1.138±0.15 N/A 1.943±0.00 3.687±0.00 N/A N/A 2.654±0.60 N/A
ENST00000399006 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.310±0.00 N/A N/A N/A N/A
ENST00000405977 N/A 0.702±0.00 N/A N/A 0.516±0.00 N/A N/A 0.668±0.00 N/A N/A N/A 0.597±0.00 1.653±0.28 N/A
ENST00000422390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.506±0.00 N/A N/A N/A
ENST00000455911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618296 N/A N/A N/A N/A 0.884±0.00 N/A N/A N/A 1.201±0.00 N/A N/A 1.071±0.58 N/A N/A
ENST00000618918 N/A N/A N/A N/A N/A 2.051±0.00 0.577±0.00 N/A N/A N/A 1.240±0.00 N/A N/A N/A
ENSG00000222281 ENST00000410349 0.158±0.00 N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00
ENSG00000224961 ENST00000417299 N/A 0.054±0.00 N/A N/A N/A 0.615±0.00 0.025±0.00 0.446±0.00 N/A 0.254±0.00 N/A 0.176±0.12 0.215±0.16 0.311±0.20
ENSG00000228422 ENST00000427835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.962±0.00
ENST00000557899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.547±1.49
ENST00000558175 0.044±0.00 0.299±0.00 N/A 0.047±0.00 N/A 0.116±0.00 0.021±0.00 0.064±0.00 N/A 0.036±0.00 0.019±0.00 0.122±0.04 0.080±0.00 N/A
ENSG00000230990 ENST00000412405 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENST00000444792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSG00000234900 ENST00000418690 0.016±0.00 0.032±0.00 N/A 0.016±0.00 0.015±0.00 0.131±0.00 N/A 0.079±0.00 N/A 0.182±0.00 N/A 0.026±0.00 0.069±0.00 0.161±0.00
ENSG00000235544 ENST00000451072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A
ENSG00000236526 ENST00000439529 N/A N/A 1.382±0.00 N/A N/A N/A 0.777±0.00 N/A N/A 1.670±0.00 0.569±0.00 1.354±0.00 N/A N/A
ENSG00000261411 ENST00000569833 0.006±0.00 0.056±0.00 N/A 0.053±0.01 0.061±0.00 N/A 0.012±0.00 0.074±0.00 0.005±0.00 0.048±0.00 0.006±0.00 0.029±0.00 N/A 0.069±0.00
ENSG00000270777 ENST00000605338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.01 N/A 0.097±0.06
ENSG00000271397 ENST00000603272 N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027276 ENSMUST00000028735 7.297±0.40 2.243±0.26 3.637±1.54 1.476±0.94 3.992±1.98 2.811±0.67 1.380±0.67 3.250±0.68 0.303±0.09 7.096±0.45 1.073±0.52 6.737±1.06 1.728±0.70 2.357±1.05
ENSMUST00000133640 N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A 0.258±0.02 N/A N/A 3.621±0.00 1.139±0.52 10.175±0.00
ENSMUSG00000062098 ENSMUST00000075410 2.737±0.74 1.112±0.35 3.828±0.07 4.121±1.29 1.158±0.30 1.407±0.56 0.946±0.34 0.803±0.25 0.323±0.06 4.430±1.06 0.899±0.22 3.702±2.43 2.376±1.81 0.133±0.04
ENSMUST00000091556 7.057±1.02 3.329±1.42 7.006±1.12 11.844±2.05 4.220±0.39 6.063±0.75 2.535±0.59 3.755±0.66 1.341±0.42 13.059±1.81 1.590±0.55 7.655±3.55 4.208±0.89 0.845±0.06
ENSMUST00000128656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082466 ENSMUST00000117747 0.633±0.54 0.488±0.02 0.039±0.01 0.389±0.28 0.529±0.37 0.714±0.34 0.210±0.00 0.233±0.12 0.052±0.01 0.895±0.14 N/A 1.082±0.45 0.136±0.04 0.288±0.16
ENSMUSG00000085504 ENSMUST00000130262 0.108±0.05 N/A 0.168±0.00 0.172±0.03 0.188±0.12 N/A N/A 0.058±0.00 N/A 0.073±0.00 N/A 0.334±0.14 0.009±0.00 0.145±0.08
ENSMUSG00000085640 ENSMUST00000134833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.558±0.39
ENSMUSG00000086214 ENSMUST00000134795 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A 0.026±0.01 N/A 0.005±0.00 0.001±0.00 N/A

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