C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0009DB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1278 VISTA 9606 20:10512535-11113791
GeneTranscriptPositionBiotype
ENSG00000101384 (JAG1)
jagged 1
ENST00000254958 (JAG1-002) 10637684-10674107 protein_coding
ENST00000423891 (JAG1-004) 10637759-10662506 processed_transcript
ENST00000488480 (JAG1-011) 10644443-10646366 retained_intron
ENST00000612857 (JAG1-010) 10645372-10647312 retained_intron
ENST00000613518 (JAG1-003) 10645722-10648028 protein_coding
ENST00000617357 (JAG1-013) 10639870-10641276 retained_intron
ENST00000617965 (JAG1-007) 10651233-10652722 retained_intron
ENST00000620743 (JAG1-009) 10647981-10649588 retained_intron
ENST00000622545 (JAG1-008) 10647048-10650257 nonsense_mediated_decay
ENSG00000125899 (C20orf187)
chromosome 20 open reading frame 187
ENST00000378252 (C20orf187-001) 11027760-11029366 lincRNA
ENSG00000149346 (SLX4IP)
SLX4 interacting protein
ENST00000334534 (SLX4IP-002) 10435303-10628034 protein_coding
ENST00000488816 (SLX4IP-001) 10598675-10636829 nonsense_mediated_decay
ENSG00000224961 (RP1-278O22.1)
ENST00000417299 (RP1-278O22.1-001) 10753090-10753966 lincRNA
ENSG00000234900 (RP1-278O22.2)
ENST00000418690 (RP1-278O22.2-001) 10753278-10765286 lincRNA
ENSG00000235036 (RP5-1099D15.1)
ENST00000456064 (RP5-1099D15.1-001) 10612861-10614229 processed_pseudogene
ENSG00000270777 (RP11-103J8.2)
ENST00000605338 (RP11-103J8.2-001) 11001304-11001763 lincRNA
CIL_0009DB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1278 VISTA 10090 2:136947708-137548975
GeneTranscriptPositionBiotype
ENSMUSG00000027276 (Jag1)
jagged 1
ENSMUST00000028735 (Jag1-001) 137081456-137116644 protein_coding
ENSMUST00000133640 (Jag1-002) 137082893-137085949 retained_intron
ENSMUSG00000027281 (Slx4ip)
SLX4 interacting protein
ENSMUST00000028737 (Slx4ip-201) 136891218-137069649 protein_coding
ENSMUST00000099311 (Slx4ip-001) 136892168-137071950 protein_coding
ENSMUST00000130856 (Slx4ip-004) 136892168-137068271 processed_transcript
ENSMUST00000135260 (Slx4ip-003) 136891608-137071950 processed_transcript
ENSMUST00000141463 (Slx4ip-002) 136891501-137000273 protein_coding
ENSMUST00000180277 (Slx4ip-202) 136905543-137069778 protein_coding
ENSMUSG00000085504 (Gm14055)
predicted gene 14055
ENSMUST00000130262 (Gm14055-001) 137288503-137329126 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DB_0001ENSG00000101384ENST00000254958ENST00000423891ENST00000488480ENST00000612857ENST00000613518ENST00000617357ENST00000617965ENST00000620743ENST00000622545ENSG00000125899ENST00000378252ENSG00000149346ENST00000334534ENST00000488816ENSG00000224961ENST00000417299ENSG00000234900ENST00000418690ENSG00000235036ENST00000456064ENSG00000270777ENST00000605338CIL_0009DB_0002ENSMUSG00000027276ENSMUST00000028735ENSMUST00000133640ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000130856ENSMUST00000135260ENSMUST00000141463ENSMUST00000180277ENSMUSG00000085504ENSMUST00000130262
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DB_0001ENSG00000101384ENST00000254958ENST00000423891ENSG00000125899ENST00000378252ENSG00000149346ENST00000334534ENST00000488816ENSG00000224961ENST00000417299ENSG00000234900ENST00000418690ENSG00000235036ENST00000456064ENSG00000270777ENST00000605338CIL_0009DB_0002ENSMUSG00000027276ENSMUST00000028735ENSMUST00000133640ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000135260ENSMUST00000180277ENSMUSG00000085504ENSMUST00000130262
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101384 ENST00000254958 19.326±0.00 12.340±0.00 1.900±0.00 2.442±1.08 8.440±1.72 10.427±4.41 3.533±1.17 4.611±4.23 4.842±4.35 13.379±7.32 4.119±0.00 6.632±1.42 21.621±13.40 5.228±3.86
ENST00000423891 N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 1.445±0.00 1.060±0.00 N/A N/A N/A
ENST00000488480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125899 ENST00000378252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.742±0.66
ENSG00000149346 ENST00000334534 0.530±0.00 0.922±0.00 0.811±0.00 0.609±0.10 1.200±0.09 0.938±0.19 0.321±0.12 1.231±0.70 0.578±0.08 0.343±0.05 0.095±0.00 1.287±0.43 0.558±0.32 1.847±0.54
ENST00000488816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A
ENSG00000224961 ENST00000417299 N/A 0.054±0.00 N/A N/A N/A 0.615±0.00 0.025±0.00 0.446±0.00 N/A 0.254±0.00 N/A 0.176±0.12 0.215±0.16 0.311±0.20
ENSG00000234900 ENST00000418690 0.016±0.00 0.032±0.00 N/A 0.016±0.00 0.015±0.00 0.131±0.00 N/A 0.079±0.00 N/A 0.182±0.00 N/A 0.026±0.00 0.069±0.00 0.161±0.00
ENSG00000235036 ENST00000456064 0.010±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A 0.027±0.00 N/A 0.009±0.00 N/A N/A N/A
ENSG00000270777 ENST00000605338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.01 N/A 0.097±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027276 ENSMUST00000028735 7.297±0.40 2.243±0.26 3.637±1.54 1.476±0.94 3.992±1.98 2.811±0.67 1.380±0.67 3.250±0.68 0.303±0.09 7.096±0.45 1.073±0.52 6.737±1.06 1.728±0.70 2.357±1.05
ENSMUST00000133640 N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A 0.258±0.02 N/A N/A 3.621±0.00 1.139±0.52 10.175±0.00
ENSMUSG00000027281 ENSMUST00000028737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.22 N/A N/A
ENSMUST00000099311 0.696±0.00 0.222±0.00 0.786±0.27 1.443±0.21 N/A N/A N/A N/A 1.063±0.42 0.523±0.03 0.804±0.09 0.965±0.17 1.337±0.24 0.732±0.30
ENSMUST00000130856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135260 N/A N/A 0.695±0.00 1.454±0.35 0.601±0.06 N/A N/A N/A 0.572±0.15 N/A 0.672±0.00 0.630±0.24 1.160±0.00 N/A
ENSMUST00000141463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.636±0.00 1.216±0.32 0.909±0.00
ENSMUSG00000085504 ENSMUST00000130262 0.108±0.05 N/A 0.168±0.00 0.172±0.03 0.188±0.12 N/A N/A 0.058±0.00 N/A 0.073±0.00 N/A 0.334±0.14 0.009±0.00 0.145±0.08

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