C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000149346-ENSG00000101384 CGP 9606 20:10435303-10674107
GeneTranscriptPositionBiotype
ENSG00000101384 (JAG1)
jagged 1 		ENST00000254958 (JAG1-002) 10637684-10674107 protein_coding
ENST00000423891 (JAG1-004) 10637759-10662506 processed_transcript
ENST00000488480 (JAG1-011) 10644443-10646366 retained_intron
ENST00000612857 (JAG1-010) 10645372-10647312 retained_intron
ENST00000613518 (JAG1-003) 10645722-10648028 protein_coding
ENST00000617357 (JAG1-013) 10639870-10641276 retained_intron
ENST00000617965 (JAG1-007) 10651233-10652722 retained_intron
ENST00000620743 (JAG1-009) 10647981-10649588 retained_intron
ENST00000622545 (JAG1-008) 10647048-10650257 nonsense_mediated_decay
ENSG00000149346 (SLX4IP)
SLX4 interacting protein 		ENST00000334534 (SLX4IP-002) 10435303-10628034 protein_coding
ENST00000488816 (SLX4IP-001) 10598675-10636829 nonsense_mediated_decay
ENSG00000235036 (RP5-1099D15.1)
 ENST00000456064 (RP5-1099D15.1-001) 10612861-10614229 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00043P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027281-ENSMUSG00000027276 CGP 10090 2:136891218-137116644
GeneTranscriptPositionBiotype
ENSMUSG00000027274 (Mkks)
McKusick-Kaufman syndrome 		ENSMUST00000028730 (Mkks-002) 136873780-136891382 protein_coding
ENSMUST00000110089 (Mkks-001) 136873780-136891389 protein_coding
ENSMUST00000144275 (Mkks-003) 136881219-136891154 protein_coding
ENSMUSG00000027276 (Jag1)
jagged 1 		ENSMUST00000028735 (Jag1-001) 137081456-137116644 protein_coding
ENSMUST00000133640 (Jag1-002) 137082893-137085949 retained_intron
ENSMUSG00000027281 (Slx4ip)
SLX4 interacting protein 		ENSMUST00000028737 (Slx4ip-201) 136891218-137069649 protein_coding
ENSMUST00000099311 (Slx4ip-001) 136892168-137071950 protein_coding
ENSMUST00000130856 (Slx4ip-004) 136892168-137068271 processed_transcript
ENSMUST00000135260 (Slx4ip-003) 136891608-137071950 processed_transcript
ENSMUST00000141463 (Slx4ip-002) 136891501-137000273 protein_coding
ENSMUST00000180277 (Slx4ip-202) 136905543-137069778 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043P_0001ENSG00000101384ENST00000254958ENST00000423891ENST00000488480ENST00000612857ENST00000613518ENST00000617357ENST00000617965ENST00000620743ENST00000622545ENSG00000149346ENST00000334534ENST00000488816ENSG00000235036ENST00000456064CIL_00043P_0002ENSMUSG00000027274ENSMUST00000028730ENSMUST00000110089ENSMUST00000144275ENSMUSG00000027276ENSMUST00000028735ENSMUST00000133640ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000130856ENSMUST00000135260ENSMUST00000141463ENSMUST00000180277
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043P_0001ENSG00000101384ENST00000254958ENST00000423891ENSG00000149346ENST00000334534ENST00000488816ENSG00000235036ENST00000456064CIL_00043P_0002ENSMUSG00000027274ENSMUST00000028730ENSMUST00000110089ENSMUST00000144275ENSMUSG00000027276ENSMUST00000028735ENSMUST00000133640ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000135260ENSMUST00000180277
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101384 ENST00000254958 19.326±0.00 12.340±0.00 1.900±0.00 2.442±1.08 8.440±1.72 10.427±4.41 3.533±1.17 4.611±4.23 4.842±4.35 13.379±7.32 4.119±0.00 6.632±1.42 21.621±13.40 5.228±3.86
ENST00000423891 N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 1.445±0.00 1.060±0.00 N/A N/A N/A
ENST00000488480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149346 ENST00000334534 0.530±0.00 0.922±0.00 0.811±0.00 0.609±0.10 1.200±0.09 0.938±0.19 0.321±0.12 1.231±0.70 0.578±0.08 0.343±0.05 0.095±0.00 1.287±0.43 0.558±0.32 1.847±0.54
ENST00000488816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A
ENSG00000235036 ENST00000456064 0.010±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A 0.027±0.00 N/A 0.009±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027274 ENSMUST00000028730 N/A 0.509±0.00 N/A N/A 2.527±0.00 N/A N/A N/A N/A N/A 1.955±0.50 1.113±0.32 N/A N/A
ENSMUST00000110089 6.442±0.53 2.933±0.70 4.555±0.45 4.094±1.02 4.409±1.25 6.000±0.93 9.022±0.77 7.731±1.25 4.554±1.43 4.211±0.19 3.269±0.39 2.900±0.70 2.841±1.86 1.395±0.15
ENSMUST00000144275 N/A N/A N/A 19.819±0.00 N/A N/A 7.135±0.00 N/A 3.417±0.11 N/A 23.303±0.83 6.845±3.63 9.748±3.60 4.760±0.00
ENSMUSG00000027276 ENSMUST00000028735 7.297±0.40 2.243±0.26 3.637±1.54 1.476±0.94 3.992±1.98 2.811±0.67 1.380±0.67 3.250±0.68 0.303±0.09 7.096±0.45 1.073±0.52 6.737±1.06 1.728±0.70 2.357±1.05
ENSMUST00000133640 N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A 0.258±0.02 N/A N/A 3.621±0.00 1.139±0.52 10.175±0.00
ENSMUSG00000027281 ENSMUST00000028737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.22 N/A N/A
ENSMUST00000099311 0.696±0.00 0.222±0.00 0.786±0.27 1.443±0.21 N/A N/A N/A N/A 1.063±0.42 0.523±0.03 0.804±0.09 0.965±0.17 1.337±0.24 0.732±0.30
ENSMUST00000130856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135260 N/A N/A 0.695±0.00 1.454±0.35 0.601±0.06 N/A N/A N/A 0.572±0.15 N/A 0.672±0.00 0.630±0.24 1.160±0.00 N/A
ENSMUST00000141463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.636±0.00 1.216±0.32 0.909±0.00

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