C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras and Rab interactor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255006 RIN2-003 ENSG00000132669 9606 + 20:19886521-20002457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000255006
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000255006 2.406±0.00 2.156±0.00 2.311±0.00 2.394±1.11 2.120±0.00 2.378±0.93 2.615±0.00 1.429±0.00 5.672±0.59 4.732±1.96 2.719±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MY CIL_0002MY_0001 CGP 20:19212646-20002457
CIL_0007Z5 CIL_0007Z5_0001 VISTA 20:19702996-20303586
CIL_0002MT CIL_0002MT_0001 CGP 20:19886521-20033655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 NAS small GTPase regulator activity
GO:0005096 IEA GTPase activator activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0007264 NAS small GTPase mediated signal transduction
GO:0017112 NAS Rab guanyl-nucleotide exchange factor activity
GO:0032851 NAS positive regulation of Rab GTPase activity
GO:0050790 NAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110005 Rin2-002 protein_coding Mus_musculus 0 3832
ENSMUST00000094480 Rin2-201 protein_coding Mus_musculus 0 3574
ENSMUST00000147976 Rin2-001 nonsense_mediated_decay Mus_musculus 0 3574
ENSMUST00000145874 Rin2-005 processed_transcript Mus_musculus 0 527
ENSDART00000131128 rin2-202 protein_coding Danio_rerio 0 383
ENSDART00000110494 rin2-201 protein_coding Danio_rerio 0 383
ENSDART00000138043 rin2-001 protein_coding Danio_rerio 0 383
ENSMUST00000149269 Rin2-006 processed_transcript Mus_musculus 0 361
ENSMUST00000150449 Rin2-004 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000142847 Rin2-003 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000144278 Rin2-007 processed_transcript Mus_musculus 5e-27 128

Loading