C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185052-ENSG00000132669 CGP 9606 20:19212646-20002457
GeneTranscriptPositionBiotype
ENSG00000132669 (RIN2)
Ras and Rab interactor 2 		ENST00000255006 (RIN2-003) 19886521-20002457 protein_coding
ENST00000440354 (RIN2-201) 19889566-20001348 protein_coding
ENST00000459721 (RIN2-002) 19889375-19956807 processed_transcript
ENST00000465815 (RIN2-004) 19889566-19895947 processed_transcript
ENST00000467569 (RIN2-005) 19889387-19970929 processed_transcript
ENST00000484638 (RIN2-001) 19935125-20002457 processed_transcript
ENST00000488077 (RIN2-006) 19889410-19935550 processed_transcript
ENSG00000179447 (RP5-1027G4.3)
 ENST00000319682 (RP5-1027G4.3-001) 19242302-19284596 antisense
ENSG00000185052 (SLC24A3)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 		ENST00000328041 (SLC24A3-001) 19212646-19722937 protein_coding
ENST00000613834 (SLC24A3-201) 19212843-19722899 protein_coding
ENSG00000221748 (AL049647.1)
 ENST00000408821 (AL049647.1-201) 19341296-19341372 miRNA
ENSG00000233895 (RP1-122P22.2)
 ENST00000412571 (RP1-122P22.2-002) 19758148-19809282 lincRNA
ENST00000426012 (RP1-122P22.2-003) 19799573-19809675 lincRNA
ENST00000432334 (RP1-122P22.2-001) 19757708-19799676 lincRNA
ENSG00000236992 (RPL12L3)
 ENST00000424633 (RPL12L3-001) 19823443-19823943 processed_pseudogene
ENSG00000268628 (RP1-122P22.4)
 ENST00000598007 (RP1-122P22.4-001) 19756390-19758037 lincRNA
ENSG00000275142 (RP5-999L4.2)
 ENST00000616029 (RP5-999L4.2-001) 19871891-19872284 lincRNA
CIL_0002MY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063873-ENSMUSG00000001768 CGP 10090 2:145167754-145887616
GeneTranscriptPositionBiotype
ENSMUSG00000001768 (Rin2)
Ras and Rab interactor 2 		ENSMUST00000094480 (Rin2-201) 145786116-145887616 protein_coding
ENSMUST00000110005 (Rin2-002) 145785980-145887616 protein_coding
ENSMUST00000142847 (Rin2-003) 145784734-145822302 protein_coding
ENSMUST00000144278 (Rin2-007) 145822150-145844818 processed_transcript
ENSMUST00000145874 (Rin2-005) 145862644-145878974 processed_transcript
ENSMUST00000147976 (Rin2-001) 145786116-145887616 nonsense_mediated_decay
ENSMUST00000149269 (Rin2-006) 145822289-145845087 processed_transcript
ENSMUST00000150449 (Rin2-004) 145786162-145822704 nonsense_mediated_decay
ENSMUSG00000063873 (Slc24a3)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 		ENSMUST00000081121 (Slc24a3-201) 145244972-145640361 protein_coding
ENSMUST00000110007 (Slc24a3-001) 145167754-145642166 protein_coding
ENSMUST00000131123 (Slc24a3-003) 145606818-145614160 processed_transcript
ENSMUST00000137908 (Slc24a3-004) 145242611-145642166 processed_transcript
ENSMUST00000153249 (Slc24a3-002) 145167919-145518947 processed_transcript
ENSMUSG00000074753 (Gm14092)
predicted gene 14092 		ENSMUST00000136794 (Gm14092-001) 145550652-145554982 antisense
ENSMUSG00000081722 (Gm11763)
predicted gene 11763 		ENSMUST00000119964 (Gm11763-001) 145701414-145701725 processed_pseudogene
ENSMUSG00000084178 (Gm11759)
predicted gene 11759 		ENSMUST00000121742 (Gm11759-001) 145510194-145510657 processed_pseudogene
ENSMUSG00000087158 (Gm14093)
predicted gene 14093 		ENSMUST00000145579 (Gm14093-001) 145337648-145379381 sense_intronic
ENSMUSG00000087594 (BC039771)
cDNA sequence BC039771 		ENSMUST00000137180 (BC039771-001) 145701195-145753672 processed_transcript
ENSMUST00000144661 (BC039771-002) 145675367-145714989 processed_transcript
ENSMUSG00000088213 (Gm22390)
predicted gene, 22390 		ENSMUST00000157588 (Gm22390-201) 145481407-145481731 misc_RNA
ENSMUSG00000092758 (Gm25026)
predicted gene, 25026 		ENSMUST00000175017 (Gm25026-201) 145878286-145878473 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MY_0001ENSG00000132669ENST00000255006ENST00000440354ENST00000459721ENST00000465815ENST00000467569ENST00000484638ENST00000488077ENSG00000179447ENST00000319682ENSG00000185052ENST00000328041ENST00000613834ENSG00000221748ENST00000408821ENSG00000233895ENST00000412571ENST00000426012ENST00000432334ENSG00000236992ENST00000424633ENSG00000268628ENST00000598007ENSG00000275142ENST00000616029CIL_0002MY_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MY_0001ENSG00000132669ENST00000255006ENST00000440354ENST00000484638ENSG00000179447ENST00000319682ENSG00000185052ENST00000328041ENST00000613834ENSG00000221748ENST00000408821ENSG00000233895ENST00000412571ENST00000426012ENST00000432334ENSG00000236992ENST00000424633ENSG00000268628ENST00000598007ENSG00000275142ENST00000616029CIL_0002MY_0002ENSMUSG00000001768ENSMUST00000094480ENSMUST00000110005ENSMUST00000144278ENSMUSG00000063873ENSMUST00000081121ENSMUST00000110007ENSMUST00000137908ENSMUSG00000074753ENSMUST00000136794ENSMUSG00000081722ENSMUST00000119964ENSMUSG00000084178ENSMUST00000121742ENSMUSG00000087158ENSMUST00000145579ENSMUSG00000087594ENSMUST00000137180ENSMUST00000144661ENSMUSG00000088213ENSMUST00000157588ENSMUSG00000092758ENSMUST00000175017
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132669 ENST00000255006 2.406±0.00 2.156±0.00 2.311±0.00 N/A 2.394±1.11 2.120±0.00 2.378±0.93 2.615±0.00 1.429±0.00 5.672±0.59 N/A 4.732±1.96 2.719±1.19 N/A
ENST00000440354 N/A N/A N/A N/A N/A N/A 4.005±0.00 N/A 1.025±0.00 13.925±0.00 2.174±1.26 N/A N/A N/A
ENST00000459721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484638 10.960±0.00 N/A N/A 4.352±2.87 7.558±0.00 3.960±0.00 2.677±0.00 8.572±0.00 N/A 11.901±0.00 2.423±0.00 3.805±0.82 3.441±1.74 2.588±2.09
ENST00000488077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179447 ENST00000319682 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.154±0.11 N/A 0.040±0.00 0.056±0.00 0.134±0.03
ENSG00000185052 ENST00000328041 0.179±0.00 0.362±0.00 N/A 2.309±0.58 3.316±0.25 2.167±0.00 0.497±0.00 1.243±0.00 1.549±1.41 1.042±0.91 2.419±0.14 2.823±1.57 3.608±1.52 1.455±0.00
ENST00000613834 1.080±0.00 2.307±0.00 0.190±0.00 7.620±0.00 12.418±0.00 2.736±2.14 0.077±0.00 N/A N/A 2.013±0.00 0.759±0.00 6.249±5.28 3.550±0.00 7.101±0.00
ENSG00000221748 ENST00000408821 N/A 1.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233895 ENST00000412571 1.284±0.00 N/A N/A 1.229±0.00 1.465±0.75 2.797±1.24 1.844±0.81 0.839±0.00 N/A 1.652±0.00 N/A 2.432±1.66 1.288±0.83 1.208±0.00
ENST00000426012 N/A N/A N/A N/A 0.886±0.77 2.966±0.00 1.439±0.00 0.201±0.00 N/A N/A N/A 0.836±0.47 0.177±0.01 N/A
ENST00000432334 N/A 1.145±0.00 N/A N/A 1.723±0.76 N/A 1.993±0.00 0.683±0.00 N/A N/A N/A 0.889±0.00 1.282±0.99 N/A
ENSG00000236992 ENST00000424633 0.273±0.00 0.512±0.00 N/A 0.147±0.00 0.647±0.00 0.624±0.00 0.034±0.00 0.075±0.00 0.068±0.00 0.251±0.00 0.822±0.00 0.247±0.14 0.231±0.08 0.127±0.07
ENSG00000268628 ENST00000598007 0.183±0.00 0.246±0.00 N/A 1.034±0.00 0.184±0.10 0.138±0.00 N/A 0.044±0.00 0.019±0.00 0.176±0.00 0.038±0.00 0.241±0.12 0.077±0.00 1.292±0.93
ENSG00000275142 ENST00000616029 0.199±0.00 1.413±0.00 N/A 0.175±0.00 0.682±0.60 1.265±1.23 0.182±0.04 0.357±0.00 1.661±0.00 1.053±0.91 N/A 0.438±0.26 0.270±0.19 0.100±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001768 ENSMUST00000094480 5.132±1.93 2.110±0.94 2.544±0.15 1.825±0.30 8.372±2.48 7.243±2.20 2.046±1.13 3.239±0.75 0.622±0.20 14.362±1.35 0.323±0.00 4.830±2.01 0.648±0.13 1.307±0.37
ENSMUST00000110005 6.565±2.29 2.233±0.58 6.440±2.87 1.771±0.48 6.232±1.72 5.427±2.73 2.781±0.72 5.677±0.96 0.956±0.45 8.248±1.34 0.485±0.21 3.185±1.66 2.266±1.04 0.476±0.07
ENSMUST00000142847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.326±0.00
ENSMUST00000145874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063873 ENSMUST00000081121 11.908±1.61 N/A N/A 49.577±47.58 4.732±0.51 N/A 0.502±0.10 0.982±0.26 0.112±0.04 2.315±0.40 0.195±0.00 9.642±5.72 2.072±2.25 4.109±3.73
ENSMUST00000110007 5.640±0.91 1.169±0.42 19.051±3.05 7.323±7.46 1.857±0.74 3.565±1.07 0.383±0.14 0.386±0.09 0.168±0.10 1.388±0.25 0.271±0.00 2.910±0.99 0.717±0.38 1.385±0.40
ENSMUST00000131123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137908 16.940±2.38 8.107±0.80 15.852±3.14 3.763±0.88 8.677±3.99 9.539±2.29 1.026±0.35 1.173±0.49 0.249±0.22 4.805±1.03 0.368±0.11 10.135±3.32 0.995±0.72 1.819±0.64
ENSMUST00000153249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074753 ENSMUST00000136794 0.150±0.06 N/A 0.016±0.00 N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 0.558±0.23
ENSMUSG00000081722 ENSMUST00000119964 N/A N/A N/A N/A N/A N/A N/A N/A 0.468±0.00 0.271±0.03 N/A N/A N/A N/A
ENSMUSG00000084178 ENSMUST00000121742 0.309±0.18 N/A 0.023±0.00 0.006±0.00 N/A N/A N/A N/A 0.072±0.00 0.150±0.00 N/A 0.531±0.20 0.098±0.00 0.127±0.00
ENSMUSG00000087158 ENSMUST00000145579 N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.34
ENSMUSG00000087594 ENSMUST00000137180 0.229±0.08 0.172±0.04 0.087±0.03 0.078±0.01 0.183±0.10 0.152±0.04 0.031±0.01 0.167±0.08 0.076±0.06 0.347±0.07 0.019±0.00 0.476±0.36 0.076±0.02 0.047±0.01
ENSMUST00000144661 0.227±0.08 0.321±0.05 0.150±0.04 0.115±0.06 0.404±0.22 0.276±0.11 0.058±0.03 0.159±0.07 0.157±0.15 0.403±0.13 0.026±0.02 0.380±0.19 0.089±0.04 0.091±0.06
ENSMUSG00000088213 ENSMUST00000157588 0.361±0.08 N/A N/A 0.128±0.08 N/A N/A N/A N/A N/A N/A N/A 0.215±0.00 N/A N/A
ENSMUSG00000092758 ENSMUST00000175017 N/A N/A 0.550±0.00 N/A N/A N/A N/A N/A 0.605±0.00 N/A N/A 1.222±0.00 0.239±0.00 N/A

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