C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras and Rab interactor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110005 Rin2-002 ENSMUSG00000001768 10090 + 2:145785980-145887616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110005 6.565±2.29 2.233±0.58 6.440±2.87 1.771±0.48 6.232±1.72 5.427±2.73 2.781±0.72 5.677±0.96 0.956±0.45 8.248±1.34 0.485±0.21 3.185±1.66 2.266±1.04 0.476±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MY CIL_0002MY_0002 CGP 2:145167754-145887616
CIL_0007Z5 CIL_0007Z5_0002 VISTA 2:145588311-146188756
CIL_0002MT CIL_0002MT_0002 CGP 2:145784734-145916425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131128 rin2-202 protein_coding Danio_rerio 0 298
ENSDART00000110494 rin2-201 protein_coding Danio_rerio 0 298
ENSDART00000138043 rin2-001 protein_coding Danio_rerio 0 298
ENST00000255006 RIN2-003 protein_coding Homo_sapiens 0 3832
ENST00000440354 RIN2-201 protein_coding Homo_sapiens 0 1210
ENST00000459721 RIN2-002 processed_transcript Homo_sapiens 0 558
ENST00000465815 RIN2-004 processed_transcript Homo_sapiens 3e-28 128
ENST00000467569 RIN2-005 processed_transcript Homo_sapiens 0 608
ENST00000484638 RIN2-001 processed_transcript Homo_sapiens 0 3081
ENST00000488077 RIN2-006 processed_transcript Homo_sapiens 0 265

Loading