C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256897 CCNH-001 ENSG00000134480 9606 - 5:87394265-87413019 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000256897
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000256897 10.911±0.00 15.647±3.53 11.415±0.38 8.138±0.00 5.134±0.00 7.661±0.00 6.052±2.97 9.255±0.00 4.225±0.00 8.259±0.00 28.498±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TN CIL_0005TN_0002 CGP 5:86617904-87391931
CIL_0005TO CIL_0005TO_0002 CGP 5:87267888-87413019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016301 IEA kinase activity
GO:0016538 IEA cyclin-dependent protein serine/threonine kinase regulator activity
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0019901 IEA protein kinase binding
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0051726 IEA regulation of cell cycle
GO:0070985 IEA TFIIK complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022030 Ccnh-001 protein_coding Mus_musculus 0 1308
ENSMUST00000164127 Ccnh-002 protein_coding Mus_musculus 0 1194
ENSMUST00000119689 Gm12955-001 processed_pseudogene Mus_musculus 0 1031
ENSMUST00000163600 Ccnh-003 protein_coding Mus_musculus 0 701
ENSMUST00000163713 Ccnh-006 protein_coding Mus_musculus 0 412
ENSMUST00000165077 Ccnh-005 protein_coding Mus_musculus 0 403
ENSMUST00000166932 Ccnh-007 retained_intron Mus_musculus 0 196
ENSMUST00000172029 Ccnh-004 processed_transcript Mus_musculus 0 196

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