C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin H
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134480 CCNH 9606 - 5:87391494-87413019 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256897 CCNH-001 87394265-87413019 protein_coding
  ENST00000504115 CCNH-008 87394326-87408186 retained_intron
  ENST00000504878 CCNH-002 87394274-87412904 protein_coding
  ENST00000505230 CCNH-005 87409073-87412850 retained_intron
  ENST00000505587 CCNH-004 87391494-87408180 retained_intron
  ENST00000508855 CCNH-003 87393417-87411294 protein_coding
  ENST00000510020 CCNH-006 87408038-87412871 processed_transcript
  ENST00000510921 CCNH-010 87392707-87404950 processed_transcript
  ENST00000511207 CCNH-009 87394280-87401774 retained_intron
  ENST00000513499 CCNH-007 87404842-87412889 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256897ENST00000504115ENST00000504878ENST00000505587ENST00000508855ENST00000510921ENST00000513499
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256897 10.911±0.00 N/A N/A 15.647±3.53 11.415±0.38 8.138±0.00 5.134±0.00 7.661±0.00 6.052±2.97 9.255±0.00 4.225±0.00 8.259±0.00 N/A 28.498±0.00
ENST00000504115 N/A N/A N/A N/A N/A N/A N/A N/A 6.992±0.00 17.178±0.00 6.638±0.00 8.845±0.00 N/A 32.766±0.00
ENST00000504878 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.727±0.00 N/A N/A N/A N/A
ENST00000505587 4.801±0.00 9.025±0.00 5.955±0.00 6.533±0.00 5.949±0.00 4.268±0.08 3.329±1.06 5.613±0.00 6.413±0.00 7.582±0.00 N/A 5.974±0.00 12.797±3.52 N/A
ENST00000508855 N/A N/A N/A N/A N/A 3.004±0.00 N/A N/A N/A 5.365±0.00 N/A 7.741±0.00 N/A N/A
ENST00000510921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.207±0.00
ENST00000513499 N/A N/A N/A N/A N/A N/A N/A N/A 8.729±0.00 N/A 8.863±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TN CIL_0005TN_0002 CGP 5:86617904-87391931
CIL_0005TO CIL_0005TO_0002 CGP 5:87267888-87413019

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016301 IEA kinase activity
GO:0016538 IEA cyclin-dependent protein serine/threonine kinase regulator activity
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0019901 IEA protein kinase binding
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0051726 IEA regulation of cell cycle
GO:0070985 IEA TFIIK complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007657 ccnh cyclin H protein_coding Danio_rerio
ENSMUSG00000021548 Ccnh cyclin H protein_coding Mus_musculus

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