C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005TO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035535-ENSDARG00000007657 CGP 7955 5:49645427-49758231
GeneTranscriptPositionBiotype
ENSDARG00000007657 (ccnh)
cyclin H 		ENSDART00000007057 (ccnh-201) 49746733-49758231 protein_coding
ENSDART00000145665 (ccnh-001) 49746731-49758231 protein_coding
ENSDARG00000035535 (rasa1a)
RAS p21 protein activator 1a 		ENSDART00000051518 (rasa1a-201) 49646058-49751679 protein_coding
ENSDART00000139824 (rasa1a-001) 49645427-49743469 protein_coding
ENSDART00000149316 (rasa1a-002) 49665110-49700903 protein_coding
ENSDART00000149716 (rasa1a-003) 49728665-49732803 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0005TO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145715-ENSG00000134480 CGP 9606 5:87267888-87413019
GeneTranscriptPositionBiotype
ENSG00000134480 (CCNH)
cyclin H 		ENST00000256897 (CCNH-001) 87394265-87413019 protein_coding
ENST00000504115 (CCNH-008) 87394326-87408186 retained_intron
ENST00000504878 (CCNH-002) 87394274-87412904 protein_coding
ENST00000505230 (CCNH-005) 87409073-87412850 retained_intron
ENST00000505587 (CCNH-004) 87391494-87408180 retained_intron
ENST00000508855 (CCNH-003) 87393417-87411294 protein_coding
ENST00000510020 (CCNH-006) 87408038-87412871 processed_transcript
ENST00000510921 (CCNH-010) 87392707-87404950 processed_transcript
ENST00000511207 (CCNH-009) 87394280-87401774 retained_intron
ENST00000513499 (CCNH-007) 87404842-87412889 processed_transcript
ENSG00000145715 (RASA1)
RAS p21 protein activator (GTPase activating protein) 1 		ENST00000274376 (RASA1-001) 87267888-87390927 protein_coding
ENST00000456692 (RASA1-002) 87268933-87391931 protein_coding
ENST00000506290 (RASA1-003) 87268944-87391129 protein_coding
ENST00000509953 (RASA1-007) 87337972-87369901 retained_intron
ENST00000512763 (RASA1-004) 87268944-87391099 protein_coding
ENST00000515800 (RASA1-005) 87267888-87391919 nonsense_mediated_decay
ENSG00000207452 (RNU6-606P)
RNA, U6 small nuclear 606, pseudogene 		ENST00000384721 (RNU6-606P-201) 87299687-87299797 snRNA
ENSG00000241243 (RN7SL629P)
RNA, 7SL, cytoplasmic 629, pseudogene 		ENST00000489622 (RN7SL629P-201) 87294189-87294473 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005TO_0001ENSDARG00000007657ENSDART00000007057ENSDART00000145665ENSDARG00000035535ENSDART00000051518ENSDART00000139824ENSDART00000149316ENSDART00000149716CIL_0005TO_0002ENSG00000134480ENST00000256897ENST00000504115ENST00000504878ENST00000505230ENST00000505587ENST00000508855ENST00000510020ENST00000510921ENST00000511207ENST00000513499ENSG00000145715ENST00000274376ENST00000456692ENST00000506290ENST00000509953ENST00000512763ENST00000515800ENSG00000207452ENST00000384721ENSG00000241243ENST00000489622
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005TO_0001ENSDARG00000007657ENSDART00000007057ENSDART00000145665ENSDARG00000035535ENSDART00000051518ENSDART00000139824CIL_0005TO_0002ENSG00000134480ENST00000256897ENST00000504115ENST00000504878ENST00000505587ENST00000508855ENST00000510921ENST00000513499ENSG00000145715ENST00000274376ENST00000456692ENST00000512763ENST00000515800ENSG00000207452ENST00000384721ENSG00000241243ENST00000489622
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007657 ENSDART00000007057 N/A N/A N/A 8.836±4.95 N/A N/A 4.582±0.37 4.112±2.36 0.338±0.00 N/A 1.339±0.00 N/A N/A N/A
ENSDART00000145665 N/A N/A N/A N/A N/A N/A 0.540±0.00 11.816±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000035535 ENSDART00000051518 N/A N/A N/A 2.506±0.11 N/A N/A 0.893±0.00 N/A 0.124±0.00 N/A N/A N/A N/A N/A
ENSDART00000139824 N/A N/A N/A 1.737±0.38 N/A N/A 3.036±0.67 5.616±2.88 0.891±0.00 N/A 2.172±0.00 N/A N/A N/A
ENSDART00000149316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134480 ENST00000256897 10.911±0.00 N/A N/A 15.647±3.53 11.415±0.38 8.138±0.00 5.134±0.00 7.661±0.00 6.052±2.97 9.255±0.00 4.225±0.00 8.259±0.00 N/A 28.498±0.00
ENST00000504115 N/A N/A N/A N/A N/A N/A N/A N/A 6.992±0.00 17.178±0.00 6.638±0.00 8.845±0.00 N/A 32.766±0.00
ENST00000504878 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.727±0.00 N/A N/A N/A N/A
ENST00000505230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505587 4.801±0.00 9.025±0.00 5.955±0.00 6.533±0.00 5.949±0.00 4.268±0.08 3.329±1.06 5.613±0.00 6.413±0.00 7.582±0.00 N/A 5.974±0.00 12.797±3.52 N/A
ENST00000508855 N/A N/A N/A N/A N/A 3.004±0.00 N/A N/A N/A 5.365±0.00 N/A 7.741±0.00 N/A N/A
ENST00000510020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.207±0.00
ENST00000511207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513499 N/A N/A N/A N/A N/A N/A N/A N/A 8.729±0.00 N/A 8.863±0.00 N/A N/A N/A
ENSG00000145715 ENST00000274376 N/A N/A 2.727±0.00 6.177±0.00 N/A 3.039±0.00 N/A 3.619±0.00 4.447±0.00 3.307±0.00 N/A 2.749±0.07 N/A N/A
ENST00000456692 N/A N/A N/A 4.771±0.00 3.278±0.00 N/A N/A 4.381±0.00 1.308±0.00 3.903±0.00 1.132±0.15 3.859±0.94 12.470±4.96 N/A
ENST00000506290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512763 N/A N/A N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A
ENST00000515800 N/A N/A N/A N/A N/A N/A N/A N/A 2.650±0.00 2.389±0.00 N/A 1.977±0.00 N/A N/A
ENSG00000207452 ENST00000384721 N/A 0.457±0.00 N/A 0.876±0.00 N/A N/A 33.816±0.00 N/A N/A N/A N/A 60.331±0.00 N/A N/A
ENSG00000241243 ENST00000489622 0.053±0.00 0.056±0.00 N/A N/A 0.057±0.00 0.052±0.00 0.367±0.00 N/A N/A N/A N/A N/A N/A 0.367±0.00

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