C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257198 DSC1-002 ENSG00000134765 9606 - 18:31129236-31162856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000257198
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000257198 0.271±0.00 0.058±0.00 0.046±0.00 0.093±0.01 0.060±0.04 0.026±0.02 1.338±0.00 0.085±0.03 0.057±0.05 0.013±0.01 0.035±0.03 0.052±0.01 0.039±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EM CIL_0006EM_0001 CGP 18:31058840-31162856
CIL_0002FH CIL_0002FH_0002 CGP 18:31129236-31357029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005921 TAS gap junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030057 IEA desmosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038710 Dsc1-201 protein_coding Mus_musculus 0 2265
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00008 55

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