C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038710 Dsc1-201 ENSMUSG00000044322 10090 - 18:20084703-20114773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverLungMusclePlacentaTestisENSMUST00000038710
Transcript ID Bladder Brain Breast Liver Lung Muscle Placenta Testis
ENSMUST00000038710 0.004±0.00 0.026±0.00 0.208±0.17 0.012±0.01 1.554±0.00 0.037±0.01 0.022±0.02 0.039±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EM CIL_0006EM_0002 CGP 18:20030633-20114773
CIL_0002FH CIL_0002FH_0003 CGP 18:20084703-20285031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0030057 IDA desmosome
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251081 DSC2-002 protein_coding Homo_sapiens 0 224
ENST00000257197 DSC1-001 protein_coding Homo_sapiens 0 2505
ENST00000257198 DSC1-002 protein_coding Homo_sapiens 0 2265

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