C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal regeneration related protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257435 NREP-003 ENSG00000134986 9606 - 5:111729296-111757258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000257435
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000257435 1.943±0.00 7.420±0.00 14.596±6.21 8.644±0.00 3.364±0.79 2.395±0.00 4.006±0.00 2.506±2.12 14.620±11.40 42.214±7.30 5.825±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004US CIL_0004US_0001 CGP 5:111496033-111997464
CIL_0008PC CIL_0008PC_0001 VISTA 5:111547843-112153084
CIL_0008TM CIL_0008TM_0001 VISTA 5:111547866-112149626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051087 Nrep-201 protein_coding Mus_musculus 0 1650
ENSMUST00000171533 Nrep-203 protein_coding Mus_musculus 0 1565
ENSMUST00000168890 Nrep-202 protein_coding Mus_musculus 0 1561

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