C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm15 VISTA 9606 5:111547843-112153084
GeneTranscriptPositionBiotype
ENSG00000129595 (EPB41L4A)
erythrocyte membrane protein band 4.1 like 4A 		ENST00000261486 (EPB41L4A-001) 112162621-112419316 protein_coding
ENST00000305368 (EPB41L4A-002) 112263408-112419313 retained_intron
ENST00000507810 (EPB41L4A-007) 112142441-112228778 processed_transcript
ENST00000509342 (EPB41L4A-004) 112165001-112183387 processed_transcript
ENST00000511405 (EPB41L4A-010) 112239600-112264987 retained_intron
ENST00000511790 (EPB41L4A-011) 112234634-112249190 processed_transcript
ENST00000512395 (EPB41L4A-005) 112262553-112392784 processed_transcript
ENST00000513333 (EPB41L4A-009) 112195661-112206062 processed_transcript
ENST00000514203 (EPB41L4A-006) 112275239-112307402 retained_intron
ENST00000515047 (EPB41L4A-003) 112170009-112205502 retained_intron
ENST00000621003 (EPB41L4A-201) 112162618-112419313 protein_coding
ENSG00000134986 (NREP)
neuronal regeneration related protein 		ENST00000257435 (NREP-003) 111729296-111757258 protein_coding
ENST00000379671 (NREP-001) 111728812-111757724 protein_coding
ENST00000395634 (NREP-008) 111729984-111976931 protein_coding
ENST00000419114 (NREP-014) 111730704-111757555 protein_coding
ENST00000446294 (NREP-005) 111729316-111757470 protein_coding
ENST00000447165 (NREP-201) 111729303-111756251 protein_coding
ENST00000450761 (NREP-009) 111730691-111997464 protein_coding
ENST00000453526 (NREP-018) 111730747-111757401 protein_coding
ENST00000455559 (NREP-010) 111730806-111758218 protein_coding
ENST00000503429 (NREP-002) 111734488-111757194 retained_intron
ENST00000504018 (NREP-022) 111730954-111756251 retained_intron
ENST00000505864 (NREP-019) 111734984-111757633 retained_intron
ENST00000507032 (NREP-013) 111735496-111758042 protein_coding
ENST00000507742 (NREP-016) 111730642-111757229 processed_transcript
ENST00000508161 (NREP-011) 111731027-111758203 protein_coding
ENST00000508870 (NREP-017) 111730868-111757643 protein_coding
ENST00000509025 (NREP-006) 111669191-111757194 protein_coding
ENST00000509427 (NREP-015) 111730724-111757409 protein_coding
ENST00000509979 (NREP-021) 111730658-111758070 protein_coding
ENST00000513100 (NREP-012) 111730932-111758094 protein_coding
ENST00000513684 (NREP-023) 111755357-111757164 retained_intron
ENST00000514515 (NREP-007) 111662621-111757194 nonsense_mediated_decay
ENST00000515855 (NREP-020) 111730517-111757194 protein_coding
ENSG00000246859 (STARD4-AS1)
STARD4 antisense RNA 1 		ENST00000500779 (STARD4-AS1-002) 111512226-111739726 antisense
ENST00000513221 (STARD4-AS1-001) 111730389-111732181 antisense
ENSG00000249439 (HMGN1P14)
high mobility group nucleosome binding domain 1 pseudogene 14 		ENST00000412459 (HMGN1P14-001) 111846050-111846566 processed_pseudogene
ENSG00000249619 (HMGN1P13)
high mobility group nucleosome binding domain 1 pseudogene 13 		ENST00000505795 (HMGN1P13-001) 111572102-111572239 processed_pseudogene
ENSG00000250095 (NREP-AS1)
NREP antisense RNA 1 		ENST00000503242 (NREP-AS1-003) 111969452-112017309 antisense
ENST00000507222 (NREP-AS1-001) 111912508-112017306 antisense
ENST00000508389 (NREP-AS1-002) 111940053-111948988 antisense
ENSG00000253057 (RN7SKP57)
RNA, 7SK small nuclear pseudogene 57 		ENST00000517248 (RN7SKP57-201) 111719769-111720061 misc_RNA
CIL_0008PC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm15 VISTA 10090 18:33252065-33854381
GeneTranscriptPositionBiotype
ENSMUSG00000024376 (Epb4.1l4a)
erythrocyte protein band 4.1-like 4a 		ENSMUST00000025234 (Epb4.1l4a-201) 33796327-34007206 protein_coding
ENSMUSG00000042834 (Nrep)
neuronal regeneration related protein 		ENSMUST00000051087 (Nrep-201) 33437019-33463634 protein_coding
ENSMUST00000168890 (Nrep-202) 33437019-33464029 protein_coding
ENSMUST00000171533 (Nrep-203) 33437019-33463747 protein_coding
ENSMUSG00000073610 (Gm10549)
predicted gene 10549 		ENSMUST00000097634 (Gm10549-201) 33464163-33472448 protein_coding
ENSMUSG00000087590 (2410004N09Rik)
RIKEN cDNA 2410004N09 gene 		ENSMUST00000146010 (2410004N09Rik-001) 33794892-33795986 lincRNA
ENSMUST00000179138 (2410004N09Rik-002) 33794939-33795969 lincRNA
ENSMUSG00000092819 (Gm23639)
predicted gene, 23639 		ENSMUST00000175078 (Gm23639-201) 33795164-33795295 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PC_0001ENSG00000129595ENST00000261486ENST00000515047ENST00000621003ENSG00000134986ENST00000257435ENST00000379671ENST00000446294ENST00000514515ENSG00000246859ENST00000500779ENSG00000249439ENST00000412459ENSG00000249619ENST00000505795ENSG00000250095ENST00000503242ENST00000507222ENSG00000253057ENST00000517248CIL_0008PC_0002ENSMUSG00000024376ENSMUST00000025234ENSMUSG00000042834ENSMUST00000051087ENSMUST00000168890ENSMUST00000171533ENSMUSG00000073610ENSMUST00000097634ENSMUSG00000087590ENSMUST00000146010ENSMUST00000179138ENSMUSG00000092819ENSMUST00000175078
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129595 ENST00000261486 3.777±0.00 N/A N/A N/A 1.574±0.06 0.860±0.29 0.698±0.20 1.237±1.02 0.190±0.00 1.279±0.12 0.424±0.00 N/A 1.091±0.18 2.021±0.10
ENST00000305368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515047 N/A N/A N/A N/A 2.936±0.00 3.102±0.00 N/A N/A 4.054±0.00 N/A N/A N/A 6.638±0.00 N/A
ENST00000621003 N/A N/A N/A N/A N/A 0.560±0.00 0.465±0.00 0.214±0.00 N/A 1.402±0.00 N/A N/A 0.824±0.04 N/A
ENSG00000134986 ENST00000257435 1.943±0.00 N/A 7.420±0.00 14.596±6.21 8.644±0.00 N/A 3.364±0.79 N/A 2.395±0.00 4.006±0.00 2.506±2.12 14.620±11.40 42.214±7.30 5.825±0.66
ENST00000379671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.307±0.00 2.890±0.00 N/A 2.104±0.00
ENST00000395634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446294 N/A 5.450±0.00 N/A 16.270±0.00 9.428±0.00 5.363±3.10 9.602±0.00 6.717±0.00 N/A N/A N/A N/A N/A 9.256±0.00
ENST00000447165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.140±0.00 N/A N/A N/A
ENST00000515855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000246859 ENST00000500779 N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A 1.059±0.00 N/A N/A N/A N/A
ENST00000513221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249439 ENST00000412459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A
ENSG00000249619 ENST00000505795 N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A 3.950±0.00 N/A N/A N/A
ENSG00000250095 ENST00000503242 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A 0.120±0.00 N/A N/A N/A N/A 0.083±0.05
ENST00000507222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENST00000508389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253057 ENST00000517248 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024376 ENSMUST00000025234 1.855±0.72 1.251±0.33 2.338±0.09 5.145±3.45 0.678±0.35 1.055±0.39 0.827±0.24 2.481±0.46 0.067±0.05 2.739±0.37 0.408±0.21 2.663±1.15 7.906±5.91 0.886±0.51
ENSMUSG00000042834 ENSMUST00000051087 N/A N/A 1.965±0.61 2.599±0.00 N/A N/A 1.168±0.00 N/A 4.400±2.03 N/A 7.623±1.20 2.934±0.00 1.877±1.09 N/A
ENSMUST00000168890 4.645±2.13 10.981±0.00 3.878±2.14 11.304±0.00 48.870±0.00 2.900±0.82 7.058±3.71 2.655±0.99 4.532±2.39 3.904±0.73 48.680±4.46 7.407±2.99 3.073±1.02 0.249±0.04
ENSMUST00000171533 12.678±7.20 177.617±57.29 6.287±0.23 169.214±123.05 23.067±9.74 2.039±1.55 11.090±0.00 10.509±1.64 11.311±5.90 24.185±8.55 9.925±2.70 15.815±5.38 5.622±2.99 0.999±0.88
ENSMUSG00000073610 ENSMUST00000097634 0.429±0.10 3.143±0.96 0.084±0.00 0.850±0.19 0.470±0.22 0.275±0.12 0.178±0.04 0.523±0.25 0.325±0.31 1.021±0.41 0.308±0.03 1.351±0.51 0.090±0.01 0.139±0.06
ENSMUSG00000087590 ENSMUST00000146010 12.015±3.91 10.724±2.89 27.055±2.49 15.588±6.61 11.895±6.34 17.377±4.09 2.840±1.39 13.410±1.10 24.156±13.57 9.261±4.41 11.189±1.13 31.062±16.95 19.698±9.41 6.560±1.06
ENSMUST00000179138 N/A 3.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092819 ENSMUST00000175078 1099.200±0.00 704.465±0.00 25.376±0.00 7.819±0.64 N/A N/A N/A 766.301±0.00 10.545±0.80 N/A N/A N/A 14.954±5.62 N/A

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