C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal regeneration related protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171533 Nrep-203 ENSMUSG00000042834 10090 - 18:33437019-33463747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171533
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171533 12.678±7.20 177.617±57.29 6.287±0.23 169.214±123.05 23.067±9.74 2.039±1.55 11.090±0.00 10.509±1.64 11.311±5.90 24.185±8.55 9.925±2.70 15.815±5.38 5.622±2.99 0.999±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004US CIL_0004US_0002 CGP 18:33199355-33464029
CIL_0008PC CIL_0008PC_0002 VISTA 18:33252065-33854381
CIL_0008TM CIL_0008TM_0002 VISTA 18:33252101-33853606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0017015 IDA regulation of transforming growth factor beta receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000045287 mapre3a-001 protein_coding Danio_rerio 0.000007 57
ENST00000257435 NREP-003 protein_coding Homo_sapiens 0 1565
ENST00000379671 NREP-001 protein_coding Homo_sapiens 0 1561
ENST00000395634 NREP-008 protein_coding Homo_sapiens 0 1430
ENST00000419114 NREP-014 protein_coding Homo_sapiens 0 673
ENST00000446294 NREP-005 protein_coding Homo_sapiens 0 1563
ENST00000447165 NREP-201 protein_coding Homo_sapiens 0 1504
ENST00000450761 NREP-009 protein_coding Homo_sapiens 0 593
ENST00000453526 NREP-018 protein_coding Homo_sapiens 0 547
ENST00000455559 NREP-010 protein_coding Homo_sapiens 0 459
ENST00000503429 NREP-002 retained_intron Homo_sapiens 0.000000002 68
ENST00000505864 NREP-019 retained_intron Homo_sapiens 0 215
ENST00000507032 NREP-013 protein_coding Homo_sapiens 0.0000002 62
ENST00000507742 NREP-016 processed_transcript Homo_sapiens 0 610
ENST00000508161 NREP-011 protein_coding Homo_sapiens 0 230
ENST00000508870 NREP-017 protein_coding Homo_sapiens 0.000003 58
ENST00000509025 NREP-006 protein_coding Homo_sapiens 0 219
ENST00000509427 NREP-015 protein_coding Homo_sapiens 0 590
ENST00000509979 NREP-021 protein_coding Homo_sapiens 0 499
ENST00000513100 NREP-012 protein_coding Homo_sapiens 0.000003 58
ENST00000513684 NREP-023 retained_intron Homo_sapiens 2e-27 126
ENST00000514515 NREP-007 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000515855 NREP-020 protein_coding Homo_sapiens 0 660

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