C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258187 NDRG4-001 ENSG00000103034 9606 + 16:58463665-58513628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverLungOvaryPlacentaTestisENST00000258187
Transcript ID Adipose Adrenal Breast Heart Liver Lung Ovary Placenta Testis
ENST00000258187 6.074±0.00 0.751±0.00 0.835±0.00 57.762±46.96 0.541±0.00 4.587±0.00 0.479±0.20 1.009±0.00 21.708±7.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IX CIL_0004IX_0001 CGP 16:58295080-58513628
CIL_0004IY CIL_0004IY_0001 CGP 16:58462846-58521181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 NAS cytoplasm
GO:0006950 NAS response to stress
GO:0016049 NAS cell growth
GO:0030154 NAS cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080666 Ndrg4-002 protein_coding Mus_musculus 0 1417
ENSMUST00000041318 Ndrg4-003 protein_coding Mus_musculus 0 1306
ENSMUST00000166358 Ndrg4-010 nonsense_mediated_decay Mus_musculus 0 1197
ENSMUST00000073139 Ndrg4-001 protein_coding Mus_musculus 0 1158
ENSMUST00000160964 Ndrg4-004 protein_coding Mus_musculus 0 917
ENSMUST00000160915 Ndrg4-005 processed_transcript Mus_musculus 0 869
ENSMUST00000159851 Ndrg4-006 retained_intron Mus_musculus 0 446
ENSMUST00000162578 Ndrg4-007 processed_transcript Mus_musculus 0 261
ENSMUST00000159632 Ndrg4-008 retained_intron Mus_musculus 5.60519e-45 187

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