C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor, beta receptor associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258449 TGFBRAP1-201 ENSG00000135966 9606 - 2:105267121-105308321 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverMuscleOvaryPlacentaENST00000258449
Transcript ID Colon Liver Muscle Ovary Placenta
ENST00000258449 1.210±0.00 2.753±0.00 1.661±0.00 4.855±0.41 4.279±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700
CIL_0003Y3 CIL_0003Y3_0001 CGP 2:105241743-105330034
CIL_0003Y4 CIL_0003Y4_0001 CGP 2:105264391-105349211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005160 IDA transforming growth factor beta receptor binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006886 IEA intracellular protein transport
GO:0007165 IDA signal transduction
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0046332 IDA SMAD binding
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095014 Tgfbrap1-001 protein_coding Mus_musculus 0 2806
ENSMUST00000186694 Tgfbrap1-003 protein_coding Mus_musculus 0 2802
ENSMUST00000188728 Tgfbrap1-008 protein_coding Mus_musculus 0 1083
ENSMUST00000188598 Tgfbrap1-006 retained_intron Mus_musculus 0 737
ENSMUST00000187872 Tgfbrap1-002 retained_intron Mus_musculus 0 695
ENSMUST00000187525 Tgfbrap1-005 retained_intron Mus_musculus 0 691
ENSMUST00000190427 Tgfbrap1-004 protein_coding Mus_musculus 0 198

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