C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (chondroitin 4) sulfotransferase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258711 CHST12-002 ENSG00000136213 9606 + 7:2403588-2434607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000258711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000258711 1.148±0.00 8.104±0.00 0.576±0.00 0.604±0.44 1.657±1.35 0.714±0.01 1.041±0.77 0.930±0.00 1.749±1.34 1.442±0.00 3.438±0.80 3.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0001 VISTA 7:2311652-2915186
CIL_00027M CIL_00027M_0002 CGP 7:2354086-2434607
CIL_0000ZM CIL_0000ZM_0001 CGP 7:2403560-2476894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008146 IEA sulfotransferase activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016051 IEA carbohydrate biosynthetic process
GO:0030173 NAS integral component of Golgi membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0030208 IDA dermatan sulfate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0047756 IDA chondroitin 4-sulfotransferase activity
GO:0050656 NAS 3'-phosphoadenosine 5'-phosphosulfate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043050 Chst12-001 protein_coding Mus_musculus 0 1149

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