C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate sulfotransferase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043050 Chst12-001 ENSMUSG00000036599 10090 + 5:140505550-140525724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043050 19.771±4.95 6.935±0.50 15.816±7.27 3.244±0.96 17.671±7.66 10.758±1.44 1.819±0.54 1.715±0.48 1.709±1.34 19.637±1.12 1.165±0.67 10.282±4.43 4.192±2.48 0.798±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0002 VISTA 5:140361312-140964153
CIL_00027M CIL_00027M_0003 CGP 5:140419305-140525724
CIL_0000ZM CIL_0000ZM_0002 CGP 5:140505550-140565071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016051 IEA carbohydrate biosynthetic process
GO:0030206 ISS chondroitin sulfate biosynthetic process
GO:0030208 ISS dermatan sulfate biosynthetic process
GO:0047756 ISS chondroitin 4-sulfotransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258711 CHST12-002 protein_coding Homo_sapiens 0 1149
ENST00000303694 CHST11-001 protein_coding Homo_sapiens 1e-18 100
ENST00000319340 CHST13-001 protein_coding Homo_sapiens 2e-16 92
ENST00000432336 CHST12-003 protein_coding Homo_sapiens 0 503
ENST00000549016 CHST11-005 protein_coding Homo_sapiens 1e-19 100
ENST00000549260 CHST11-002 protein_coding Homo_sapiens 1e-18 100
ENST00000615522 CHST13-201 protein_coding Homo_sapiens 2e-16 92
ENST00000618655 CHST12-201 protein_coding Homo_sapiens 0 1149

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