C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 interacting protein C-terminal helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259008 BRIP1-001 ENSG00000136492 9606 - 17:61681266-61863521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259008 0.037±0.00 0.171±0.00 0.092±0.00 0.087±0.00 0.097±0.00 0.682±0.61 0.045±0.00 0.025±0.00 0.118±0.00 0.232±0.00 0.014±0.00 0.956±0.67 0.217±0.05 3.071±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JV CIL_0007JV_0001 UCNEbase 17:61126460-61946035
CIL_00096P CIL_00096P_0001 VISTA 17:61515758-62116780
CIL_0006ZY CIL_0006ZY_0001 CGP 17:61681266-61928016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 NAS DNA damage checkpoint
GO:0003676 IEA nucleic acid binding
GO:0003677 NAS:IEA DNA binding
GO:0004003 NAS:IEA ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0006302 NAS double-strand break repair
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008026 IEA ATP-dependent helicase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031965 IDA nuclear membrane
GO:0032508 IEA DNA duplex unwinding
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044423 Brip1-001 protein_coding Mus_musculus 0 2606
ENSMUST00000123366 Brip1-003 processed_transcript Mus_musculus 0 237
ENSMUST00000149748 Brip1-002 processed_transcript Mus_musculus 0 235

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