C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box F2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042054 Foxf2-001 ENSMUSG00000038402 10090 + 13:31625816-31631403 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042054 0.063±0.03 0.013±0.00 7.357±0.99 2.109±1.35 0.127±0.05 13.804±0.85 0.063±0.04 0.024±0.02 0.038±0.05 21.278±2.15 0.037±0.01 0.268±0.12 0.772±0.50 0.068±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000388 CIL_000388_0002 CGP 13:31558324-31631403
CIL_00038B CIL_00038B_0002 CGP 13:31625816-31810643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 ISO DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0030198 IGI extracellular matrix organization
GO:0042249 IGI establishment of planar polarity of embryonic epithelium
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0048566 IGI embryonic digestive tract development
GO:0048596 IMP embryonic camera-type eye morphogenesis
GO:0048806 IEA genitalia development
GO:0060021 IEA palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028159 foxf2a-001 protein_coding Danio_rerio 0 298
ENST00000259806 FOXF2-001 protein_coding Homo_sapiens 0 1581
ENST00000262426 FOXF1-001 protein_coding Homo_sapiens 0 427
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 7e-23 113
ENST00000380874 FOXC1-001 protein_coding Homo_sapiens 4e-22 111

Loading