C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261197 ST8SIA1-007 ENSG00000111728 9606 - 12:22200999-22334714 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261197
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261197 1.495±0.00 3.717±0.00 1.036±0.00 1.101±0.65 0.286±0.05 0.185±0.00 0.849±0.83 2.100±1.74 0.088±0.00 0.694±0.50 0.219±0.08 1.201±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090B CIL_00090B_0001 VISTA 12:21591137-22192666
CIL_0005PR CIL_0005PR_0001 CGP 12:21797401-22065674
CIL_0005PQ CIL_0005PQ_0001 CGP 12:22063773-22544546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003828 IEA alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity
GO:0005975 TAS carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0006688 TAS glycosphingolipid biosynthetic process
GO:0008373 TAS sialyltransferase activity
GO:0016021 TAS integral component of membrane
GO:0030173 IEA integral component of Golgi membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032421 St8sia1-001 protein_coding Mus_musculus 0 651
ENSMUST00000147058 St8sia1-002 processed_transcript Mus_musculus 0 547

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