C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mindbomb E3 ubiquitin protein ligase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261537 MIB1-001 ENSG00000101752 9606 + 18:21741320-21870957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261537 4.499±0.00 2.357±0.00 3.305±0.00 5.366±0.00 3.522±0.12 2.854±0.52 2.353±0.15 3.660±0.95 4.284±2.66 5.739±1.34 1.539±0.50 3.132±1.42 2.130±1.36 6.286±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0001 VISTA 18:21458991-22061961
CIL_0005NX CIL_0005NX_0001 CGP 18:21650897-21870957
CIL_0005NR CIL_0005NR_0001 CGP 18:21704957-22202528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001701 IEA in utero embryonic development
GO:0001756 IEA somitogenesis
GO:0001841 IEA neural tube formation
GO:0001947 IEA heart looping
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0007219 TAS Notch signaling pathway
GO:0007507 IEA heart development
GO:0008270 IEA zinc ion binding
GO:0014069 IEA postsynaptic density
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031410 IEA cytoplasmic vesicle
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045807 IEA positive regulation of endocytosis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052838 Mib1-001 protein_coding Mus_musculus 0 4205
ENSMUST00000165555 Mib1-201 protein_coding Mus_musculus 0 4148
ENSMUST00000124288 Mib1-004 protein_coding Mus_musculus 0 2518
ENSMUST00000131073 Mib1-003 retained_intron Mus_musculus 0 1640
ENSMUST00000150000 Mib1-002 protein_coding Mus_musculus 0 1002
ENSDART00000128234 mib-201 protein_coding Danio_rerio 0 800

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