C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261741 RBM19-001 ENSG00000122965 9606 - 12:113822057-113966371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261741 2.596±0.00 3.687±0.00 1.465±0.00 1.107±0.04 1.833±0.15 2.806±0.01 1.115±0.51 1.657±1.29 1.343±0.00 3.509±0.82 3.560±0.00 2.695±1.16 3.504±1.49 2.102±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0001 VISTA 12:113363390-113966000
CIL_000875 CIL_000875_0001 VISTA 12:113632311-114233611
CIL_0008LK CIL_0008LK_0001 VISTA 12:113632321-114234251

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005694 IEA chromosome
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0016020 IDA membrane
GO:0040019 ISS positive regulation of embryonic development
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031590 Rbm19-201 protein_coding Mus_musculus 0 2333

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