C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031590 Rbm19-201 ENSMUSG00000029594 10090 + 5:120116510-120197979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000031590
Transcript ID Adrenal Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000031590 1.657±0.00 4.758±0.00 0.561±0.00 0.414±0.00 1.814±0.00 1.440±0.00 3.477±2.05 4.498±0.00 3.354±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095S CIL_00095S_0002 VISTA 5:119521983-120124240
CIL_0008CB CIL_0008CB_0002 VISTA 5:119676561-120277190
CIL_000875 CIL_000875_0002 VISTA 5:119835778-120436934
CIL_0008LK CIL_0008LK_0002 VISTA 5:119835887-120436924
CIL_000842 CIL_000842_0002 VISTA 5:119987382-120588927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005694 IEA chromosome
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0040019 IMP positive regulation of embryonic development
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261741 RBM19-001 protein_coding Homo_sapiens 0 2333
ENST00000392561 RBM19-002 protein_coding Homo_sapiens 0 2320
ENST00000545145 RBM19-003 protein_coding Homo_sapiens 0 2313
ENST00000546876 RBM19-004 processed_transcript Homo_sapiens 1e-35 154

Loading