C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262209 TRPA1-001 ENSG00000104321 9606 - 8:72021251-72075617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonOvaryENST00000262209
Transcript ID Bladder Breast Colon Ovary
ENST00000262209 0.068±0.00 0.733±0.00 1.308±0.83 1.041±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FQ CIL_0003FQ_0001 CGP 8:71841549-72075617
CIL_0005BY CIL_0005BY_0002 CGP 8:72019917-72938349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 TAS:IEA ion transport
GO:0006816 IEA calcium ion transport
GO:0009409 IEA response to cold
GO:0015267 TAS channel activity
GO:0016020 IEA membrane
GO:0032421 IEA stereocilium bundle
GO:0034220 TAS ion transmembrane transport
GO:0042493 IEA response to drug
GO:0042542 IEA response to hydrogen peroxide
GO:0048265 IEA response to pain
GO:0050955 IEA thermoception
GO:0050966 IEA detection of mechanical stimulus involved in sensory perception of pain
GO:0050968 IEA detection of chemical stimulus involved in sensory perception of pain
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041447 Trpa1-001 protein_coding Mus_musculus 0 2736

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