C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262352 SLC1A1-001 ENSG00000106688 9606 + 9:4490444-4587469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262352
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262352 1.809±0.00 1.620±0.00 4.456±0.00 5.063±1.42 0.685±0.09 1.177±0.02 0.296±0.17 5.466±2.34 14.859±14.05 4.092±0.52 0.329±0.25 0.974±0.40 3.172±0.73 1.452±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0001 CGP 9:3824127-4587469
CIL_0000NJ CIL_0000NJ_0001 CGP 9:4490444-4666674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0007268 TAS synaptic transmission
GO:0015501 IEA glutamate:sodium symporter activity
GO:0015813 IEA L-glutamate transport
GO:0016020 TAS:IEA membrane
GO:0016595 IEA glutamate binding
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0051260 IEA protein homooligomerization
GO:0051938 IDA L-glutamate import
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070779 IDA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025875 Slc1a1-001 protein_coding Mus_musculus 0 2058
ENSMUST00000162189 Slc1a1-004 retained_intron Mus_musculus 0 1672
ENSMUST00000160702 Slc1a1-003 retained_intron Mus_musculus 0 1360
ENSMUST00000179171 4430402I18Rik-201 protein_coding Mus_musculus 0 1356
ENSMUST00000161119 Slc1a1-002 retained_intron Mus_musculus 0 1146

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