C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025875 Slc1a1-001 ENSMUSG00000024935 10090 + 19:28835074-28913960 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLungMuscleOvaryPlacentaENSMUST00000025875
Transcript ID Adipose Bladder Brain Heart Kidney Lung Muscle Ovary Placenta
ENSMUST00000025875 2.719±0.98 1.054±0.00 4.776±2.68 0.703±0.09 19.107±6.27 2.474±0.18 0.548±0.18 1.777±0.73 3.674±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960
CIL_0000NJ CIL_0000NJ_0002 CGP 19:28835049-28967800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0015501 IDA glutamate:sodium symporter activity
GO:0015813 IDA L-glutamate transport
GO:0016021 IEA integral component of membrane
GO:0016595 IEA glutamate binding
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0051260 IPI protein homooligomerization
GO:0051938 IEA L-glutamate import
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome
GO:0070779 IEA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262352 SLC1A1-001 protein_coding Homo_sapiens 0 2058
ENST00000371494 SLC1A7-001 protein_coding Homo_sapiens 0 233
ENST00000422398 SLC1A1-002 protein_coding Homo_sapiens 0 553
ENST00000488036 SLC1A7-003 processed_transcript Homo_sapiens 2e-17 95
ENST00000611397 SLC1A7-201 protein_coding Homo_sapiens 0 233
ENST00000620347 SLC1A7-203 protein_coding Homo_sapiens 0 233

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