C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106688-ENSG00000106686 CGP 9606 9:4490444-4666674
GeneTranscriptPositionBiotype
ENSG00000106688 (SLC1A1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENST00000262352 (SLC1A1-001) 4490444-4587469 protein_coding
ENST00000422398 (SLC1A1-002) 4572335-4585557 protein_coding
ENST00000490167 (SLC1A1-003) 4559805-4564458 processed_transcript
ENSG00000205808 (PPAPDC2)
phosphatidic acid phosphatase type 2 domain containing 2 		ENST00000381883 (PPAPDC2-001) 4662315-4665258 protein_coding
ENSG00000225893 (RP11-6J24.3)
 ENST00000429407 (RP11-6J24.3-001) 4633027-4633756 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000NJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024935-ENSMUSG00000064202 CGP 10090 19:28835049-28967800
GeneTranscriptPositionBiotype
ENSMUSG00000024935 (Slc1a1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENSMUST00000025875 (Slc1a1-001) 28835074-28913960 protein_coding
ENSMUST00000160702 (Slc1a1-003) 28893013-28911877 retained_intron
ENSMUST00000161119 (Slc1a1-002) 28835135-28905992 retained_intron
ENSMUST00000161340 (Slc1a1-005) 28835049-28879301 retained_intron
ENSMUST00000162189 (Slc1a1-004) 28895793-28912638 retained_intron
ENSMUSG00000040105 (Ppapdc2)
phosphatidic acid phosphatase type 2 domain containing 2 		ENSMUST00000045674 (Ppapdc2-001) 28963953-28966811 protein_coding
ENSMUSG00000064202 (4430402I18Rik)
RIKEN cDNA 4430402I18 gene 		ENSMUST00000025872 (4430402I18Rik-001) 28923064-28964154 protein_coding
ENSMUST00000159655 (4430402I18Rik-004) 28923533-28929227 processed_transcript
ENSMUST00000160542 (4430402I18Rik-007) 28923688-28963587 protein_coding
ENSMUST00000161813 (4430402I18Rik-005) 28948731-28963908 protein_coding
ENSMUST00000162110 (4430402I18Rik-003) 28923530-28967800 protein_coding
ENSMUST00000164777 (4430402I18Rik-006) 28923688-28963587 protein_coding
ENSMUST00000175647 (4430402I18Rik-002) 28901268-28967730 nonsense_mediated_decay
ENSMUST00000179171 (4430402I18Rik-201) 28893042-28911879 protein_coding
ENSMUSG00000089993 (Gm5822)
predicted gene 5822 		ENSMUST00000161562 (Gm5822-001) 28862330-28863707 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NJ_0001ENSG00000106688ENST00000262352ENST00000422398ENST00000490167ENSG00000205808ENST00000381883ENSG00000225893ENST00000429407CIL_0000NJ_0002ENSMUSG00000024935ENSMUST00000025875ENSMUST00000160702ENSMUST00000161119ENSMUST00000161340ENSMUST00000162189ENSMUSG00000040105ENSMUST00000045674ENSMUSG00000064202ENSMUST00000025872ENSMUST00000159655ENSMUST00000160542ENSMUST00000161813ENSMUST00000162110ENSMUST00000164777ENSMUST00000175647ENSMUST00000179171ENSMUSG00000089993ENSMUST00000161562
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NJ_0001ENSG00000106688ENST00000262352ENST00000422398ENSG00000205808ENST00000381883ENSG00000225893ENST00000429407CIL_0000NJ_0002ENSMUSG00000024935ENSMUST00000025875ENSMUST00000161340ENSMUSG00000040105ENSMUST00000045674ENSMUSG00000064202ENSMUST00000025872ENSMUST00000159655ENSMUST00000161813ENSMUST00000162110ENSMUST00000164777ENSMUST00000179171ENSMUSG00000089993ENSMUST00000161562
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106688 ENST00000262352 1.809±0.00 1.620±0.00 4.456±0.00 5.063±1.42 0.685±0.09 1.177±0.02 0.296±0.17 5.466±2.34 14.859±14.05 4.092±0.52 0.329±0.25 0.974±0.40 3.172±0.73 1.452±0.00
ENST00000422398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A N/A 0.451±0.00
ENST00000490167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205808 ENST00000381883 3.140±0.00 4.062±0.00 1.521±0.00 2.704±1.19 2.648±0.40 1.160±0.30 0.590±0.42 2.496±0.24 4.153±2.00 1.480±0.81 0.311±0.00 2.994±0.88 4.968±1.09 3.104±0.29
ENSG00000225893 ENST00000429407 0.179±0.00 0.050±0.00 N/A 0.103±0.07 0.330±0.23 0.215±0.02 0.046±0.00 0.089±0.02 0.131±0.00 1.055±0.00 0.044±0.00 0.060±0.02 0.053±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024935 ENSMUST00000025875 2.719±0.98 N/A 1.054±0.00 4.776±2.68 N/A N/A 0.703±0.09 19.107±6.27 N/A 2.474±0.18 0.548±0.18 1.777±0.73 3.674±2.74 N/A
ENSMUST00000160702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161340 N/A N/A N/A N/A N/A 15.023±0.00 N/A N/A N/A N/A N/A 9.960±0.00 N/A N/A
ENSMUST00000162189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040105 ENSMUST00000045674 10.080±0.60 23.696±4.20 3.629±1.69 5.895±4.56 10.886±4.15 21.641±3.03 3.105±0.44 10.555±1.60 3.709±2.19 11.126±0.91 1.163±0.14 9.604±1.81 2.962±1.41 22.684±2.19
ENSMUSG00000064202 ENSMUST00000025872 N/A N/A N/A N/A N/A N/A 1.845±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159655 N/A N/A N/A N/A N/A N/A N/A N/A 4.491±0.00 N/A N/A N/A N/A 113.843±0.00
ENSMUST00000160542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161813 N/A N/A N/A N/A N/A N/A 13.929±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162110 N/A N/A N/A N/A N/A N/A 2.334±0.60 N/A N/A N/A 0.764±0.00 N/A N/A 97.875±30.77
ENSMUST00000164777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A
ENSMUST00000175647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179171 4.545±1.84 N/A N/A 7.560±6.55 N/A 12.257±2.26 N/A 30.141±5.74 N/A 5.249±0.93 0.508±0.08 6.064±2.09 5.252±3.25 N/A
ENSMUSG00000089993 ENSMUST00000161562 0.128±0.12 N/A 0.169±0.06 0.164±0.06 0.246±0.23 0.134±0.06 0.048±0.02 0.455±0.06 0.072±0.03 0.140±0.06 0.045±0.02 0.309±0.25 0.528±0.37 0.058±0.01

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