C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262395 TRAF4-001 ENSG00000076604 9606 + 17:28743984-28750958 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262395
Transcript ID Bladder Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262395 0.588±0.00 0.103±0.01 4.746±0.00 2.380±2.03 0.312±0.00 0.142±0.00 9.026±1.98 7.346±3.19 4.881±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZR CIL_0004ZR_0002 CGP 17:28725897-28750958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005164 IPI tumor necrosis factor receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0006915 IEA apoptotic process
GO:0007165 TAS:IEA signal transduction
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0007585 IEA respiratory gaseous exchange
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0019901 IEA protein kinase binding
GO:0030323 IEA respiratory tube development
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031996 IPI thioesterase binding
GO:0042981 IEA regulation of apoptotic process
GO:0045860 IDA positive regulation of protein kinase activity
GO:0046330 IEA:IDA positive regulation of JNK cascade
GO:0046872 IEA metal ion binding
GO:0050699 IPI WW domain binding
GO:0090073 IDA positive regulation of protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017530 Traf4-001 protein_coding Mus_musculus 0 2220
ENSMUST00000160509 Gm6903-001 processed_pseudogene Mus_musculus 0 1175
ENSMUST00000149437 Traf4-002 retained_intron Mus_musculus 0 1118
ENSMUST00000148218 Traf4-003 retained_intron Mus_musculus 0 549

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