C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004ZR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045626-ENSDARG00000003963 CGP 7955 15:14498457-14612278
GeneTranscriptPositionBiotype
ENSDARG00000003963 (traf4a)
tnf receptor-associated factor 4a 		ENSDART00000016024 (traf4a-001) 14535627-14612278 protein_coding
ENSDARG00000045626 (nek8)
NIMA (never in mitosis gene a)-related kinase 8 		ENSDART00000067095 (nek8-001) 14498457-14533028 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004ZR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000160602-ENSG00000076604 CGP 9606 17:28725897-28750958
GeneTranscriptPositionBiotype
ENSG00000076604 (TRAF4)
TNF receptor-associated factor 4 		ENST00000262395 (TRAF4-001) 28743984-28750958 protein_coding
ENST00000262396 (TRAF4-010) 28744085-28749644 protein_coding
ENST00000394925 (TRAF4-006) 28744055-28747713 retained_intron
ENST00000422344 (TRAF4-002) 28744030-28748326 protein_coding
ENST00000444415 (TRAF4-009) 28744040-28750037 protein_coding
ENST00000454852 (TRAF4-019) 28747214-28749023 nonsense_mediated_decay
ENST00000461195 (TRAF4-008) 28744019-28748423 retained_intron
ENST00000469529 (TRAF4-007) 28747730-28749034 retained_intron
ENST00000473421 (TRAF4-004) 28747016-28748423 protein_coding
ENST00000475329 (TRAF4-003) 28744223-28748326 nonsense_mediated_decay
ENST00000478021 (TRAF4-005) 28744018-28745518 nonsense_mediated_decay
ENST00000498540 (TRAF4-014) 28744023-28747732 retained_intron
ENST00000578917 (TRAF4-017) 28747582-28748153 retained_intron
ENST00000580073 (TRAF4-018) 28748124-28748742 retained_intron
ENST00000584944 (TRAF4-016) 28746743-28748297 protein_coding
ENST00000586813 (TRAF4-020) 28744036-28748603 nonsense_mediated_decay
ENST00000618771 (TRAF4-201) 28744005-28749577 protein_coding
ENSG00000265840 (AC010761.10)
 ENST00000579468 (AC010761.10-001) 28749731-28750079 antisense
ENSG00000267729 (AC010761.14)
 ENST00000587898 (AC010761.14-001) 28727258-28727739 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZR_0001ENSDARG00000003963ENSDART00000016024ENSDARG00000045626ENSDART00000067095CIL_0004ZR_0002ENSG00000076604ENST00000262395ENST00000262396ENST00000394925ENST00000422344ENST00000444415ENST00000454852ENST00000461195ENST00000469529ENST00000473421ENST00000475329ENST00000478021ENST00000498540ENST00000578917ENST00000580073ENST00000584944ENST00000586813ENST00000618771ENSG00000265840ENST00000579468ENSG00000267729ENST00000587898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZR_0001ENSDARG00000003963ENSDART00000016024ENSDARG00000045626ENSDART00000067095CIL_0004ZR_0002ENSG00000076604ENST00000262395ENST00000262396ENST00000422344ENST00000444415ENST00000454852ENST00000461195ENST00000469529ENST00000580073ENST00000584944ENST00000586813ENST00000618771ENSG00000265840ENST00000579468ENSG00000267729ENST00000587898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003963 ENSDART00000016024 N/A N/A N/A 24.419±4.86 N/A N/A 1.602±1.54 1.198±0.00 0.220±0.00 N/A 1.092±0.00 N/A N/A N/A
ENSDARG00000045626 ENSDART00000067095 N/A N/A N/A 0.741±0.44 N/A N/A 1.280±0.65 1.202±0.45 0.045±0.00 N/A 0.373±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076604 ENST00000262395 N/A N/A 0.588±0.00 N/A N/A N/A 0.103±0.01 4.746±0.00 2.380±2.03 0.312±0.00 0.142±0.00 9.026±1.98 7.346±3.19 4.881±0.00
ENST00000262396 N/A N/A N/A N/A N/A N/A N/A N/A 0.539±0.00 N/A N/A 2.593±0.00 N/A N/A
ENST00000394925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422344 N/A N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000444415 0.535±0.00 3.359±0.00 N/A N/A 1.322±0.00 2.359±0.24 0.318±0.00 7.384±0.00 4.262±0.00 11.314±0.00 0.428±0.00 12.616±0.00 11.722±5.89 5.809±3.22
ENST00000454852 N/A N/A 1.532±0.00 N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000461195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.144±0.00 N/A N/A
ENST00000469529 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.452±0.00 N/A N/A N/A N/A
ENST00000473421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580073 N/A N/A N/A N/A N/A 3.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584944 N/A N/A N/A 1.945±0.00 2.595±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586813 N/A N/A N/A N/A N/A N/A N/A 2.005±0.00 0.663±0.00 N/A N/A N/A N/A N/A
ENST00000618771 2.662±0.00 13.292±0.00 N/A N/A 16.226±0.00 6.339±0.00 N/A 27.515±0.00 9.882±9.03 29.307±0.00 N/A N/A 10.297±0.00 7.551±0.00
ENSG00000265840 ENST00000579468 N/A N/A N/A N/A N/A 6.880±0.00 0.843±0.00 20.830±0.00 17.391±0.00 28.440±0.00 N/A 7.392±0.00 N/A 7.406±0.00
ENSG00000267729 ENST00000587898 0.694±0.00 0.237±0.00 N/A 0.683±0.00 0.878±0.00 0.692±0.00 0.220±0.00 2.178±0.00 0.105±0.00 0.218±0.00 N/A 9.484±9.02 N/A 1.182±1.07

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