C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149437 Traf4-002 ENSMUSG00000017386 10090 - 11:78158499-78165589 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENSMUST00000149437
Transcript ID Brain Muscle Ovary
ENSMUST00000149437 0.152±0.00 0.227±0.06 2.545±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056878 traf4b-001 protein_coding Danio_rerio 5.60519e-45 187
ENST00000262395 TRAF4-001 protein_coding Homo_sapiens 0 1118
ENST00000262396 TRAF4-010 protein_coding Homo_sapiens 0 651
ENST00000394925 TRAF4-006 retained_intron Homo_sapiens 0 379
ENST00000422344 TRAF4-002 protein_coding Homo_sapiens 0 699
ENST00000444415 TRAF4-009 protein_coding Homo_sapiens 0 1079
ENST00000454852 TRAF4-019 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000461195 TRAF4-008 retained_intron Homo_sapiens 0 553
ENST00000469529 TRAF4-007 retained_intron Homo_sapiens 0 686
ENST00000473421 TRAF4-004 protein_coding Homo_sapiens 0 586
ENST00000475329 TRAF4-003 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000478021 TRAF4-005 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000498540 TRAF4-014 retained_intron Homo_sapiens 0 374
ENST00000502593 CTB-70D19.1-001 processed_pseudogene Homo_sapiens 0 481
ENST00000578917 TRAF4-017 retained_intron Homo_sapiens 1e-34 150
ENST00000580073 TRAF4-018 retained_intron Homo_sapiens 0 488
ENST00000584944 TRAF4-016 protein_coding Homo_sapiens 0 442
ENST00000586813 TRAF4-020 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000618771 TRAF4-201 protein_coding Homo_sapiens 0 383

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